Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHU33_RS13460 Genome accession   NZ_CP108237
Coordinates   2880392..2881417 (+) Length   341 a.a.
NCBI ID   WP_266522660.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00079     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2875392..2886417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU33_RS13445 (OHU33_13365) - 2876291..2876992 (+) 702 WP_266522666.1 FadR/GntR family transcriptional regulator -
  OHU33_RS13450 (OHU33_13370) - 2877173..2878738 (-) 1566 WP_266522664.1 protease pro-enzyme activation domain-containing protein -
  OHU33_RS13455 (OHU33_13375) - 2879769..2880068 (-) 300 WP_266522662.1 hypothetical protein -
  OHU33_RS13460 (OHU33_13380) cytR 2880392..2881417 (+) 1026 WP_266522660.1 LacI family DNA-binding transcriptional regulator Regulator
  OHU33_RS13465 (OHU33_13385) - 2881753..2882826 (+) 1074 WP_266522658.1 substrate-binding domain-containing protein -
  OHU33_RS13470 (OHU33_13390) - 2882834..2883793 (+) 960 WP_008736101.1 ABC transporter permease -
  OHU33_RS13475 (OHU33_13395) - 2883806..2884645 (+) 840 WP_405658156.1 ATP-binding cassette domain-containing protein -
  OHU33_RS13480 (OHU33_13400) - 2884638..2885609 (+) 972 WP_405658159.1 ribokinase -
  OHU33_RS13485 (OHU33_13405) rbsD 2885614..2886009 (+) 396 WP_405658162.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36603.59 Da        Isoelectric Point: 5.8748

>NTDB_id=656909 OHU33_RS13460 WP_266522660.1 2880392..2881417(+) (cytR) [Streptomyces sp. NBC_00079]
MATRRDVARLAGTSEALVSYVLNNGPRKVAPATRERILAAIDELGYRPNVVARSLKTSRTMTFGLVVPDNSNPFFAELAR
VIEDVGFASGYTMLLGNAMGDDAREATYIRTLLDRQVDGLIVVPIHGPHSWVAELSEQTTVPRLVLDRELELPGATQVLT
DNEGGAYQATSHLLAHGRQRIGCIAGLEGVHPTVDRVAGWRRALVEAGRDPESASLTHVPFGRADGYRAGRRMLAEAGHP
DALFVASDEQAIGVLRAAAELGLRVPDDVAVCAFDGIDGSEYTVPALTTMQQPFDELGRSAVEWLLAKIADPTLPVRRIT
HPTTLIARGSCGCPDLAGATR

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=656909 OHU33_RS13460 WP_266522660.1 2880392..2881417(+) (cytR) [Streptomyces sp. NBC_00079]
ATGGCAACTCGCCGCGACGTGGCGCGCCTGGCGGGCACCTCCGAGGCCCTGGTCAGCTACGTCCTCAACAACGGCCCCCG
CAAGGTCGCCCCCGCCACCCGCGAGCGGATCCTCGCGGCGATAGACGAGCTCGGCTACCGCCCCAACGTGGTGGCCCGGT
CCCTGAAGACCTCGCGGACCATGACCTTCGGGCTGGTCGTGCCCGACAACTCCAACCCCTTCTTCGCCGAGCTGGCCCGC
GTCATCGAGGATGTCGGCTTCGCCTCCGGCTACACGATGCTGCTGGGCAACGCGATGGGTGACGACGCCCGCGAGGCGAC
GTACATCCGGACCCTGCTCGACCGGCAGGTGGACGGGCTCATCGTGGTCCCGATCCACGGCCCGCACAGTTGGGTCGCGG
AGCTGTCCGAGCAGACGACCGTGCCCCGGCTGGTGCTCGACCGCGAGCTGGAGCTGCCGGGGGCGACGCAGGTGCTCACC
GACAACGAGGGCGGCGCGTACCAGGCCACCTCCCATCTACTCGCTCACGGCCGGCAGCGGATCGGGTGCATTGCCGGGCT
GGAGGGCGTGCATCCGACGGTCGACCGGGTCGCGGGCTGGCGCCGGGCCCTCGTCGAGGCCGGGCGGGATCCGGAGAGCG
CGTCGCTGACGCATGTGCCGTTCGGCCGGGCCGACGGGTACCGGGCCGGCCGGCGGATGCTCGCGGAGGCGGGGCATCCG
GACGCGCTCTTCGTGGCGAGTGACGAGCAGGCCATCGGCGTCCTGCGCGCCGCCGCCGAACTGGGACTGCGCGTCCCCGA
CGACGTGGCGGTCTGCGCCTTCGACGGTATCGACGGCAGCGAGTACACGGTGCCCGCGCTCACCACCATGCAGCAGCCCT
TCGACGAGCTGGGCCGCTCGGCCGTCGAGTGGCTCCTGGCCAAGATCGCCGACCCCACCCTCCCGGTACGGCGCATCACC
CACCCCACCACCCTGATCGCCCGCGGCTCCTGCGGCTGCCCGGACCTCGCCGGGGCGACTCGATGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-331)

Bacterial regulatory proteins, lacI family (LacI)

(5-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.152

100

0.364