Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HP1CL_RS02365 Genome accession   NZ_AP013356
Coordinates   475707..475970 (+) Length   87 a.a.
NCBI ID   WP_001177716.1    Uniprot ID   T0EUE0
Organism   Helicobacter pylori 26695-1CL     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 470707..480970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP1CL_RS02340 - 473276..473944 (+) 669 WP_001862498.1 AAA family ATPase -
  HP1CL_RS02345 - 473922..474709 (+) 788 Protein_434 integrase -
  HP1CL_RS02350 - 474712..474942 (+) 231 WP_000189081.1 hypothetical protein -
  HP1CL_RS02355 - 474935..475414 (+) 480 WP_000593414.1 hypothetical protein -
  HP1CL_RS02360 comB2 475411..475695 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  HP1CL_RS02365 comB3 475707..475970 (+) 264 WP_001177716.1 hypothetical protein Machinery gene
  HP1CL_RS02370 - 475982..476218 (+) 237 WP_001168532.1 hypothetical protein -
  HP1CL_RS02375 - 476218..478794 (+) 2577 WP_000893960.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HP1CL_RS08870 - 478791..478931 (+) 141 WP_000789926.1 hypothetical protein -
  HP1CL_RS02385 - 478924..479409 (+) 486 Protein_442 hypothetical protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9970.83 Da        Isoelectric Point: 5.7206

>NTDB_id=65667 HP1CL_RS02365 WP_001177716.1 475707..475970(+) (comB3) [Helicobacter pylori 26695-1CL]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=65667 HP1CL_RS02365 WP_001177716.1 475707..475970(+) (comB3) [Helicobacter pylori 26695-1CL]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0EUE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

60.92

100

0.609

Multiple sequence alignment