Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG786_RS21650 Genome accession   NZ_CP108217
Coordinates   5027848..5029581 (-) Length   577 a.a.
NCBI ID   WP_275494336.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00101     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5022848..5034581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG786_RS21640 (OG786_21650) - 5024703..5025821 (+) 1119 WP_405459927.1 RNA polymerase sigma factor -
  OG786_RS21645 (OG786_21655) rcrQ 5025923..5027848 (-) 1926 WP_275494335.1 ABC transporter ATP-binding protein Regulator
  OG786_RS21650 (OG786_21660) rcrP 5027848..5029581 (-) 1734 WP_275494336.1 ABC transporter ATP-binding protein Regulator
  OG786_RS21655 (OG786_21665) - 5029702..5031174 (-) 1473 WP_405459930.1 FGGY family carbohydrate kinase -
  OG786_RS21660 (OG786_21670) - 5031310..5031615 (-) 306 WP_275494338.1 YtxH domain-containing protein -
  OG786_RS21680 (OG786_21690) - 5032484..5033329 (-) 846 WP_405459932.1 IS5 family transposase -
  OG786_RS21685 (OG786_21695) - 5033596..5034441 (-) 846 WP_405459932.1 IS5 family transposase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62599.88 Da        Isoelectric Point: 6.9614

>NTDB_id=656544 OG786_RS21650 WP_275494336.1 5027848..5029581(-) (rcrP) [Streptomyces sp. NBC_00101]
MLIKLLRSFLGPYRRPILLLVVLQLLQTCASLYLPSLNADIIDNGVVKGDTGYILEYGGVMIAVSVLQVVCNIGAVYYGA
RTASALGRDLRAAVFDRVQSFSAREVARFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGVVMALGQDVPLSAV
LLAVVPLLGIAVSLIVRKMRPLFRTMQTRLDTVNRVLREQITGNRVIRAFVRDGYEVKRFRGANTELTDVAVSTGRLMAL
MFPVVMTVVNVSSVAVVWFGAHRIDSGGMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIDEVLETDSSVVP
PAAPVTELRRHGHLELRGAQFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTEGEVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVASNLRYGNPDATDEELWHALEVAQAKEFVERLENGLNAPIAQGGTNVSGGQRQRL
AIARTLVRKPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVSTIRDADRILVLDEGRVVGTGTHRELMDGN
GTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=656544 OG786_RS21650 WP_275494336.1 5027848..5029581(-) (rcrP) [Streptomyces sp. NBC_00101]
GTGCTCATAAAACTGCTCAGGTCCTTCCTGGGCCCCTACCGAAGGCCGATCCTGCTGCTGGTGGTCCTCCAGCTGCTGCA
GACCTGCGCCTCGCTCTACCTGCCCAGCCTCAACGCCGACATCATCGACAACGGCGTGGTGAAGGGCGACACGGGTTACA
TCCTGGAGTACGGCGGTGTGATGATCGCCGTCAGCGTCCTCCAGGTCGTCTGCAACATCGGCGCGGTCTACTACGGGGCG
CGGACGGCGTCCGCGCTCGGCCGTGACCTGCGGGCCGCGGTCTTCGACCGGGTGCAGTCGTTCTCGGCCCGCGAGGTCGC
CCGGTTCGGGGCCCCCTCGCTGATCACCCGTACGACCAACGACGTCCAGCAGATCCAGATGCTGGTGCTGATGACGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGTGTCGGCGGGGTCGTCATGGCACTGGGCCAGGACGTGCCGCTCTCCGCCGTG
CTGCTGGCCGTGGTGCCGCTGCTGGGGATCGCGGTGAGCCTGATCGTCCGGAAGATGCGGCCGCTGTTCCGCACCATGCA
GACGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGTAACCGGGTGATCCGTGCCTTCGTGCGCGACG
GCTACGAGGTGAAGCGGTTCCGAGGCGCGAACACCGAGCTGACGGACGTGGCGGTCTCCACGGGCCGGCTGATGGCGCTG
ATGTTCCCGGTCGTGATGACCGTGGTGAACGTGTCCTCGGTCGCGGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCTCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCGGAGCGCATCGACGAGGTCCTGGAGACCGACTCCAGCGTGGTGCCG
CCCGCGGCCCCGGTGACGGAGCTGCGGCGGCACGGTCATCTGGAGCTGCGCGGCGCCCAGTTCCGTTACCCGGGTGCCGA
GGAGCCGGTGCTTCGCTCGGTGGACCTGGTGGCGCGGCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTGGGGCTCGTACCGCGGCTGTTCGACGTGACGGAGGGCGAGGTTCTCGTCGACGGTACGGACGTGCGG
ACGCTGGACCCGGTGCTGCTGGCGAAGACGGTGAGCCTGGTGCCGCAGAAGCCGTACCTCTTCTCCGGGACGGTGGCGTC
GAACCTGCGCTACGGGAACCCGGACGCGACGGACGAGGAGCTCTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGGAGCGGCTGGAGAACGGTCTGAACGCGCCGATCGCGCAGGGCGGCACCAACGTCTCCGGCGGCCAGCGGCAGCGTCTG
GCGATCGCGCGGACGCTGGTGCGCAAGCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTCGGCCGGGAGACGGCGGGGGCGACGGTGGTGATCGTCGCGCAGCGGGTGTCCACCATCC
GCGATGCCGACCGGATCCTCGTCCTGGACGAGGGGCGGGTCGTGGGAACGGGCACCCATCGCGAGCTGATGGACGGCAAT
GGGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCGGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.172

100

0.404