Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG786_RS20080 Genome accession   NZ_CP108217
Coordinates   4682463..4684718 (+) Length   751 a.a.
NCBI ID   WP_405459484.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4677463..4689718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG786_RS20040 (OG786_20065) - 4677469..4678914 (+) 1446 WP_327269474.1 AAA family ATPase -
  OG786_RS20045 (OG786_20070) - 4678920..4679669 (+) 750 WP_275494122.1 HNH endonuclease -
  OG786_RS20050 (OG786_20075) - 4679694..4679906 (-) 213 WP_327269476.1 DUF397 domain-containing protein -
  OG786_RS20055 (OG786_20080) - 4679890..4680717 (-) 828 WP_327269477.1 helix-turn-helix transcriptional regulator -
  OG786_RS20060 (OG786_20085) - 4680863..4681102 (+) 240 WP_405459474.1 hypothetical protein -
  OG786_RS20065 (OG786_20090) - 4681099..4681515 (+) 417 WP_405459476.1 hypothetical protein -
  OG786_RS20070 (OG786_20095) - 4681578..4681787 (-) 210 WP_405459479.1 hypothetical protein -
  OG786_RS20075 (OG786_20100) - 4681807..4682160 (-) 354 WP_405459481.1 hypothetical protein -
  OG786_RS20080 (OG786_20105) recD/recD2/recDB 4682463..4684718 (+) 2256 WP_405459484.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG786_RS20085 (OG786_20110) - 4684935..4686233 (+) 1299 WP_275494130.1 citrate synthase -
  OG786_RS20090 (OG786_20115) - 4686947..4689265 (-) 2319 WP_405459487.1 heavy metal translocating P-type ATPase -
  OG786_RS20095 (OG786_20120) - 4689393..4689698 (-) 306 WP_275494132.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81561.36 Da        Isoelectric Point: 7.2005

>NTDB_id=656539 OG786_RS20080 WP_405459484.1 4682463..4684718(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00101]
MPSAPTPPTPPHLAVLEGVLERVTYANEENGYTVARVDTGRGGDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVE
NYTTVLPATIQGIRRYLGSGLIKGIGPVMADRITTHFGTETLDIIENAPKRLVEVPGLGPKRTKKIADAWEEQKAIKEVM
IFLQSVGVSTSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVRAGLQYALSQSCDQGH
CYLPEERLIADGVKLLQVDTGLVIDCLAELAADPEGVVREKVPSPEGGEPVTAVYLVPFHRAELSLAGQVRRLLRTPEDR
MPAFRDVDWEKALEWLARRTGATLAPEQEAAVRLALSRKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAK
RLSELTGAEASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGE
VLRDLLAEGGPVPAVRLTRIFRQAQHSGVVTNAHRINSGQPPLTHGLDDFFLFVEDETEDAGVLAVDVAARRLPKKFGLD
PRRDIQVLTPMHRGLAGAGHLNTLLQQVITPGRPELPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTLGVVTSLDTD
EQRLTVRTDEDEEIGYDFDELDELAHAYAMTIHRSQGSEYPAVVVPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAI
GQAVRTVSAGRRFTALDFRLRGGSEEDPPKK

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=656539 OG786_RS20080 WP_405459484.1 4682463..4684718(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00101]
ATGCCCTCCGCGCCCACTCCGCCCACCCCACCCCACCTGGCCGTCCTCGAAGGTGTCCTGGAGCGGGTCACGTACGCCAA
CGAGGAGAACGGGTACACCGTCGCCCGCGTCGACACCGGGCGCGGCGGCGATCTGCTCACCGTGGTGGGCTCGCTGCTCG
GCGCGCAGCCGGGGGAGTCGCTGCGGATGGAGGGGCGTTGGGGCTCGCACCCGCAGTACGGCAAGCAGTTCACCGTGGAG
AACTACACGACGGTGCTCCCCGCGACCATCCAGGGCATCCGCCGCTACCTCGGCTCCGGGCTGATCAAGGGGATCGGGCC
GGTCATGGCCGACCGGATCACCACCCACTTCGGCACCGAGACCCTCGACATCATCGAGAACGCACCGAAGCGGCTCGTCG
AGGTTCCCGGGCTCGGCCCGAAGCGCACGAAGAAGATCGCCGACGCGTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATG
ATCTTCCTCCAGTCGGTCGGGGTCTCGACCTCGATCGCCGTGCGGATCTACAAGAAGTACGAGGACGCGTCGATCTCCGT
CGTGAAGAACCAGCCCTACCGGCTGGCCGCCGACGTGTGGGGCATCGGCTTCCTGACCGCCGACCGGATCGCGCAGGCGG
TCGGCATCCCGCACGACAGCCCGGAACGGGTGCGGGCCGGACTTCAGTACGCCCTCTCCCAGTCCTGCGACCAGGGCCAC
TGCTACCTCCCCGAGGAACGTCTGATCGCGGACGGGGTGAAGCTGCTCCAGGTCGACACCGGGCTGGTCATCGACTGCCT
CGCCGAACTGGCCGCCGACCCGGAGGGCGTCGTACGGGAGAAGGTGCCGTCGCCGGAGGGCGGGGAACCGGTGACGGCGG
TCTACCTCGTGCCGTTCCACCGGGCGGAGCTCTCCCTCGCCGGGCAGGTGCGCAGGCTGCTGCGGACTCCGGAGGACCGG
ATGCCCGCGTTCCGGGACGTGGACTGGGAGAAGGCGCTGGAGTGGCTGGCGCGGCGGACGGGCGCCACCCTCGCGCCCGA
GCAGGAGGCGGCGGTCCGGCTCGCGTTGAGCCGGAAGGTGGCCGTGCTGACCGGCGGACCGGGATGCGGGAAGTCGTTCA
CCGTACGCTCCGTGGTCGAGCTGGCCCGCGCGAAGAAGGCGAAGGTCGTGCTCGCGGCTCCCACCGGGCGGGCCGCGAAA
CGCCTCTCCGAGCTGACCGGCGCCGAGGCGTCCACCGTGCACCGGCTGTTGGAACTGAAGCCGGGCGGCGACGCCGCGTA
CGACCGGGACCGTCCGCTCGACGCCGATCTGGTCGTCGTCGACGAGGCGTCCATGCTCGATCTGCTCCTCGCCAACAAGC
TCGTGAAGGCGGTGGCGCCCGGTGCCCACCTGCTGCTCGTCGGCGACGTGGACCAGTTGCCGTCGGTCGGCGCGGGCGAG
GTGCTGCGGGACCTGCTCGCCGAGGGCGGACCCGTCCCCGCCGTCCGGCTGACCCGCATCTTCCGCCAGGCCCAGCACTC
CGGCGTGGTCACCAACGCCCACCGCATCAACTCCGGCCAGCCCCCGCTCACCCACGGGCTCGACGACTTCTTCCTCTTCG
TGGAGGACGAGACGGAGGACGCCGGGGTGCTCGCCGTGGACGTGGCCGCCCGCCGCCTCCCGAAGAAGTTCGGCCTCGAT
CCGCGCCGCGACATCCAGGTCCTCACCCCGATGCACCGGGGTCTCGCCGGCGCCGGACACCTCAACACCCTGCTCCAGCA
GGTCATCACGCCGGGCCGCCCCGAGTTGCCGGAGAAGCGGTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTGACCC
AGATCCGCAACAACTACGACAAGGGGGAGAACGGTGTCTTCAACGGCACCCTCGGCGTCGTGACCTCACTCGACACCGAC
GAGCAGCGGCTGACCGTGCGCACCGACGAGGACGAGGAGATCGGCTACGACTTCGACGAGCTGGACGAGCTGGCGCACGC
CTACGCCATGACGATCCATCGCTCCCAGGGCAGCGAGTACCCGGCCGTCGTCGTCCCCGTCACCACCAGCGCCTGGATGA
TGCTCCAGCGCAACCTCCTCTACACGGCGGTGACGCGGGCCAAGAAGCTCGTCGTCCTCGTCGGTTCACGGAAGGCGATC
GGGCAGGCGGTCCGCACGGTTTCCGCCGGGAGGCGCTTCACGGCACTGGATTTCCGGCTTCGCGGAGGGTCCGAGGAAGA
CCCACCGAAAAAATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-242)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(581-647)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(666-714)

AAA domain (AAA_30)

(343-522)

Helix-hairpin-helix domain (HHH_5)

(102-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.891

100

0.368