Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HP1CH_RS02360 Genome accession   NZ_AP013355
Coordinates   475417..475701 (+) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori 26695-1CH     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 470417..480701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP1CH_RS02340 - 473282..473950 (+) 669 WP_001862498.1 AAA family ATPase -
  HP1CH_RS02345 - 473928..474715 (+) 788 Protein_435 integrase -
  HP1CH_RS02350 - 474718..474948 (+) 231 WP_000189081.1 hypothetical protein -
  HP1CH_RS02355 - 474941..475420 (+) 480 WP_000593414.1 hypothetical protein -
  HP1CH_RS02360 comB2 475417..475701 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  HP1CH_RS02365 comB3 475713..475976 (+) 264 WP_001177716.1 hypothetical protein Machinery gene
  HP1CH_RS02370 - 475988..476224 (+) 237 WP_001168532.1 hypothetical protein -
  HP1CH_RS02375 - 476224..478800 (+) 2577 WP_000893960.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HP1CH_RS08890 - 478797..478937 (+) 141 WP_000789926.1 hypothetical protein -
  HP1CH_RS02385 - 478930..479415 (+) 486 Protein_443 hypothetical protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=65644 HP1CH_RS02360 WP_000736478.1 475417..475701(+) (comB2) [Helicobacter pylori 26695-1CH]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=65644 HP1CH_RS02360 WP_000736478.1 475417..475701(+) (comB2) [Helicobacter pylori 26695-1CH]
ATGAAAAAATTAAGTCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTCATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553

Multiple sequence alignment