Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HP1CH_RS00095 Genome accession   NZ_AP013355
Coordinates   13702..13983 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori 26695-1CH     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8702..18983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP1CH_RS00075 groES 9268..9624 (-) 357 WP_000671934.1 co-chaperone GroES -
  HP1CH_RS00080 dnaG 9911..11590 (+) 1680 WP_000601638.1 DNA primase -
  HP1CH_RS00085 - 11587..12639 (+) 1053 WP_000721203.1 MnmA/TRMU family protein -
  HP1CH_RS00090 - 12728..13555 (+) 828 WP_001154906.1 DUF5718 family protein -
  HP1CH_RS00095 comB2 13702..13983 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HP1CH_RS00100 comB3 13983..14246 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  HP1CH_RS00105 comB4 14248..16611 (+) 2364 WP_000890508.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HP1CH_RS00110 - 16932..18272 (+) 1341 WP_015056018.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=65633 HP1CH_RS00095 WP_001272690.1 13702..13983(+) (comB2) [Helicobacter pylori 26695-1CH]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=65633 HP1CH_RS00095 WP_001272690.1 13702..13983(+) (comB2) [Helicobacter pylori 26695-1CH]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATCTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCTCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment