Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OHB59_RS23620 Genome accession   NZ_CP108206
Coordinates   5253674..5254798 (-) Length   374 a.a.
NCBI ID   WP_266672362.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5248674..5259798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB59_RS23610 (OHB59_23555) gyrB 5250762..5252861 (-) 2100 WP_329434579.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OHB59_RS23615 (OHB59_23560) - 5253135..5253677 (-) 543 WP_116512070.1 DUF721 domain-containing protein -
  OHB59_RS23620 (OHB59_23565) recF 5253674..5254798 (-) 1125 WP_266672362.1 DNA replication/repair protein RecF Machinery gene
  OHB59_RS23625 (OHB59_23570) gnd 5254902..5255777 (-) 876 WP_266672361.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  OHB59_RS23630 (OHB59_23575) dnaN 5255955..5257085 (-) 1131 WP_266672359.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40912.59 Da        Isoelectric Point: 6.7125

>NTDB_id=656302 OHB59_RS23620 WP_266672362.1 5253674..5254798(-) (recF) [Streptomyces sp. NBC_00110]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVRQGERQ
QLIELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQ
RNTLLKSAALARRHGGRSMDLSTLDVWDQHLARVGAELLAQRFDLIATLQPLADKAYEQLAPGGGPLALEYKPSSPEIDG
HAREELYEQLMAALEAARKQEIERGVTLVGPHRDDLVLKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVL
DDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLAGARYAVSDGTVERI

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=656302 OHB59_RS23620 WP_266672362.1 5253674..5254798(-) (recF) [Streptomyces sp. NBC_00110]
ATGCACGTGACGCATCTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGATCCGGGCGTCACCGC
GTTCGTGGGCCCGAACGGGCAGGGCAAGACCAACCTCGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCGCCGCTGGTCCGCATGGGCGCCGAGCGCGCCGTCATCCGGGCCGCGGTCCGGCAGGGCGAGCGACAG
CAGCTCATCGAGCTCGAACTCAACCCGGGCAAGGCGAACCGCGCCAGGATCAACCGGTCCTCGCAGGTCAGACCCCGTGA
TGTGCTCGGCATCGTGCGCACGGTCCTGTTCGCGCCGGAGGACCTCGCGCTCGTCAAGGGCGACCCCGGCGAGCGCCGCC
GCTTTCTCGACGAGCTGATCACGGCCCGCTCCCCGCGCATGGCCGGTGTCCGGTCCGACTACGACCGCGTGCTCAAGCAG
CGCAACACGCTCCTCAAGTCGGCCGCGCTCGCCCGCAGGCACGGCGGCCGGTCCATGGACCTGTCGACCCTCGACGTGTG
GGACCAGCACCTCGCGCGCGTGGGCGCCGAGCTGCTCGCGCAGCGGTTCGACCTGATAGCCACGCTCCAGCCGCTCGCCG
ACAAGGCGTACGAACAGCTGGCGCCCGGCGGCGGCCCGCTCGCTCTGGAATACAAGCCGTCCTCGCCCGAAATCGACGGC
CACGCGCGCGAAGAGCTCTACGAGCAGCTGATGGCCGCCCTCGAAGCGGCCCGCAAACAGGAGATCGAGCGGGGCGTGAC
CCTCGTCGGACCGCACCGCGACGACCTGGTCCTCAAGCTCGGCCAGCTGCCGGCGAAGGGGTACGCCAGCCATGGCGAGT
CCTGGTCGTACGCGCTGGCGCTGCGCCTGGCCTCCTACGACCTGCTGCGGGCCGAGGGGAACGAGCCGGTGCTCGTGCTC
GACGACGTCTTCGCGGAGCTCGACGCGCGGCGCAGGGAGCGTCTCGCCGAGCTGGTCGCCCCCGGCGAGCAGGTCCTGGT
GACGGCCGCGGTGGACGACGACGTGCCGGGTGTCCTGGCGGGAGCACGGTACGCGGTGTCCGACGGCACGGTGGAGCGGA
TATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.921

95.187

0.361