Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MF271_RS13565 Genome accession   NZ_CP092190
Coordinates   2151358..2152455 (-) Length   365 a.a.
NCBI ID   WP_239049242.1    Uniprot ID   -
Organism   Deinococcus sp. KNUC1210     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2146358..2157455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF271_RS13535 (MF271_13535) - 2146692..2147774 (-) 1083 WP_239049237.1 M20/M25/M40 family metallo-hydrolase -
  MF271_RS13540 (MF271_13540) - 2147897..2148319 (-) 423 WP_239049238.1 hypothetical protein -
  MF271_RS13545 (MF271_13545) - 2148488..2149741 (+) 1254 WP_239049239.1 sensor histidine kinase KdpD -
  MF271_RS13550 (MF271_13550) - 2149738..2150321 (+) 584 Protein_2169 response regulator -
  MF271_RS13555 (MF271_13555) - 2150413..2150895 (-) 483 WP_239049240.1 hypothetical protein -
  MF271_RS13560 (MF271_13560) - 2151026..2151328 (+) 303 WP_239049241.1 hypothetical protein -
  MF271_RS13565 (MF271_13565) dprA 2151358..2152455 (-) 1098 WP_239049242.1 DNA-processing protein DprA Machinery gene
  MF271_RS13570 (MF271_13570) - 2152465..2153523 (-) 1059 WP_239049243.1 family 10 glycosylhydrolase -
  MF271_RS13590 (MF271_13590) - 2154406..2155620 (+) 1215 WP_239049244.1 low temperature requirement protein A -
  MF271_RS13595 (MF271_13595) ddrC 2155687..2156406 (+) 720 WP_239049245.1 DNA damage response protein DdrC -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 38142.48 Da        Isoelectric Point: 6.4123

>NTDB_id=656302 MF271_RS13565 WP_239049242.1 2151358..2152455(-) (dprA) [Deinococcus sp. KNUC1210]
MTVPSTPSSSVHADPELLALLTLRFTPGLGPRRVEALRTFCGSAQAVLTTPLPQLRGVPGLDVKALQAIGTATPASRAAQ
EIERAAEYGATLLGRGLEGYPEALESLSDPPAVIWVSGELPPLAAVPRAIGVVGTRKASSHALHLTGQISTDLTRAGVTV
VSGLARGIDTAAHAATVNAGGVSIGILGSGLDQMYPPENEGLSRRMVVISEYPLGTSPAAHNFPQRNRLIAALSAGTLVV
EGEFRSGAMITATHALECGRTVFAVPGRAGDPLSQGPHRLLREGGVLTETAQDILNEFGWNGPGAAPLPDLPPEQQRLWE
LLAQPATLDDLQAQSGLTHAQLQVALMMLTLGGHIDEQAGRYRRR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=656302 MF271_RS13565 WP_239049242.1 2151358..2152455(-) (dprA) [Deinococcus sp. KNUC1210]
GTGACCGTTCCTTCCACGCCGTCTTCTTCCGTTCATGCCGACCCCGAACTGCTCGCCCTGCTGACGCTGCGCTTCACACC
TGGGCTGGGGCCGCGCCGGGTCGAGGCTCTCCGGACCTTCTGCGGCTCGGCCCAGGCAGTGCTGACCACGCCGCTGCCGC
AACTGCGCGGGGTGCCGGGGCTGGACGTGAAGGCGCTCCAGGCCATCGGCACGGCGACCCCGGCGAGCAGGGCGGCGCAG
GAGATCGAGCGGGCCGCCGAGTACGGAGCCACGCTGCTGGGGCGCGGGCTGGAGGGCTATCCGGAGGCGCTCGAAAGCCT
GAGCGACCCGCCCGCCGTGATCTGGGTGAGCGGCGAGTTGCCGCCCCTCGCGGCGGTTCCGCGTGCCATCGGGGTGGTCG
GTACGCGAAAGGCCAGCAGCCACGCGCTGCACCTGACCGGCCAGATCAGCACCGATCTGACGCGGGCGGGCGTGACGGTG
GTGTCGGGGCTGGCACGCGGTATCGACACGGCGGCGCACGCGGCAACGGTCAATGCGGGTGGCGTCAGCATCGGCATTCT
GGGCAGCGGCCTCGATCAGATGTATCCGCCCGAGAACGAAGGACTGTCACGCCGCATGGTGGTCATCAGCGAATATCCGC
TGGGCACCAGCCCCGCCGCCCACAACTTTCCGCAACGAAATCGGCTGATCGCCGCCCTGAGCGCGGGCACCCTGGTCGTG
GAGGGCGAATTCAGATCCGGGGCCATGATCACAGCCACGCACGCACTGGAATGTGGGCGCACGGTGTTCGCGGTGCCGGG
GCGGGCAGGCGACCCGCTGTCGCAGGGGCCACACCGTCTGCTGCGCGAGGGCGGCGTGCTGACCGAAACCGCCCAGGACA
TCCTGAACGAATTCGGCTGGAACGGCCCCGGCGCGGCCCCGCTGCCCGATCTGCCGCCTGAGCAGCAGCGGCTCTGGGAA
CTGCTGGCCCAGCCCGCCACCCTCGACGACCTGCAGGCACAGTCGGGACTGACCCACGCCCAGCTTCAGGTCGCCCTGAT
GATGCTGACACTCGGCGGGCACATCGACGAACAGGCCGGGCGATACAGACGGCGCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(305-360)

DNA recombination-mediator protein A (DNA_processg_A)

(88-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.544

96.164

0.573