Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MF271_RS13080 Genome accession   NZ_CP092190
Coordinates   2057499..2058647 (-) Length   382 a.a.
NCBI ID   WP_239049162.1    Uniprot ID   -
Organism   Deinococcus sp. KNUC1210     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2052499..2063647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF271_RS13050 (MF271_13050) - 2052762..2053751 (+) 990 WP_239049159.1 DNA-directed RNA polymerase subunit alpha -
  MF271_RS13055 (MF271_13055) rplQ 2053830..2054180 (+) 351 WP_189089278.1 50S ribosomal protein L17 -
  MF271_RS13060 (MF271_13060) - 2054240..2054923 (-) 684 WP_239049160.1 DUF2259 domain-containing protein -
  MF271_RS24845 (MF271_13065) rplS 2055097..2055549 (+) 453 Protein_2073 50S ribosomal protein L19 -
  MF271_RS13070 (MF271_13070) - 2055875..2056862 (+) 988 Protein_2074 malate dehydrogenase -
  MF271_RS13075 (MF271_13075) - 2056934..2057434 (-) 501 WP_239049161.1 hypothetical protein -
  MF271_RS13080 (MF271_13080) pilD 2057499..2058647 (-) 1149 WP_239049162.1 A24 family peptidase Machinery gene
  MF271_RS13085 (MF271_13085) - 2058717..2059700 (-) 984 WP_239049163.1 GNAT family N-acetyltransferase -
  MF271_RS13090 (MF271_13090) - 2059734..2060711 (-) 978 WP_239049164.1 GNAT family N-acetyltransferase -
  MF271_RS13095 (MF271_13095) - 2060708..2061688 (-) 981 WP_239049165.1 GNAT family N-acetyltransferase -
  MF271_RS13100 (MF271_13100) - 2061685..2062347 (-) 663 WP_239049166.1 GNAT family N-acetyltransferase -
  MF271_RS13105 (MF271_13105) - 2062341..2062664 (-) 324 WP_239049167.1 hypothetical protein -
  MF271_RS13110 (MF271_13110) - 2062750..2063414 (+) 665 Protein_2082 PIG-L deacetylase family protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 40566.21 Da        Isoelectric Point: 7.2194

>NTDB_id=656301 MF271_RS13080 WP_239049162.1 2057499..2058647(-) (pilD) [Deinococcus sp. KNUC1210]
MIPDALITVFAALLGLLIGSFSNVLIWRLPRHESINFPPSHCPHCNHQLAPLDLVPVLSWVALRGKCRYCGAPISPRYPV
VELITGLGYALLSLAFPASVIGWSLLGLCLLFTFLLVSSVIDTETYTIPDELTLPGAVIGLIFGVVNARSSGAAAAGLPV
FEGALRGMLLGAGLLIVIDLFGSWVLRRLRERSYPEFPLGFQQIGVSLLAGAWLGVWWGVAAGVLSAVLNMTLRRVLRVP
EWLTLGGTLLSLAVAGSGTGIGPGLILMVQGSVAAAGGMALLCGLYWWLRPGAEDEDEPYDPSAMGFGDVKLAALIGAFL
GWEKLLVAVVVAVFAGAVLGVLQLVVWKENRLKFGPYLAIGAVVALLFGPRLIEVYRSTFGL

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=656301 MF271_RS13080 WP_239049162.1 2057499..2058647(-) (pilD) [Deinococcus sp. KNUC1210]
GTGATTCCAGACGCCCTTATCACGGTGTTCGCCGCCCTGCTGGGTCTGCTGATCGGCTCGTTCTCCAACGTGCTGATCTG
GCGGCTGCCCCGGCACGAAAGCATCAATTTCCCACCGTCGCACTGTCCGCACTGCAACCATCAGCTCGCCCCGCTCGATC
TGGTGCCGGTGCTGTCGTGGGTGGCCCTGCGCGGCAAATGCCGGTACTGCGGCGCACCCATCAGCCCCCGCTATCCGGTG
GTCGAACTCATCACCGGCCTCGGCTACGCGCTGCTCAGTCTGGCGTTTCCAGCATCCGTCATCGGCTGGAGCCTGCTGGG
CCTGTGTCTGCTGTTCACCTTCCTGCTGGTCAGCTCGGTCATCGACACCGAGACGTATACCATTCCCGACGAACTGACGC
TGCCGGGCGCGGTCATCGGTCTGATCTTCGGCGTGGTGAACGCCCGCAGCAGCGGCGCGGCGGCGGCGGGTCTGCCGGTA
TTCGAGGGAGCACTGCGCGGCATGCTGCTGGGCGCTGGCCTGCTGATCGTGATCGACCTGTTCGGGTCGTGGGTGCTGCG
CCGCCTGCGCGAACGTTCGTACCCCGAGTTTCCGCTGGGCTTTCAACAGATCGGCGTTTCGCTGCTGGCGGGTGCGTGGC
TGGGCGTGTGGTGGGGTGTCGCGGCGGGCGTGCTGAGCGCCGTCCTGAATATGACGCTGCGCCGCGTGCTGCGCGTGCCC
GAATGGCTGACGCTGGGCGGCACGCTGCTGAGTCTGGCAGTGGCGGGCAGTGGCACCGGCATCGGGCCGGGCCTGATTCT
GATGGTGCAGGGCAGCGTGGCAGCGGCGGGCGGCATGGCGCTGCTGTGCGGCCTGTACTGGTGGCTGCGCCCCGGAGCAG
AAGACGAGGACGAACCGTATGACCCCAGCGCGATGGGCTTCGGTGATGTCAAACTGGCTGCCCTGATCGGCGCGTTTCTG
GGCTGGGAAAAGTTGCTGGTGGCGGTGGTCGTCGCGGTGTTCGCGGGTGCCGTGCTGGGCGTGTTGCAACTGGTCGTCTG
GAAGGAAAACCGCCTGAAATTCGGCCCCTATCTGGCCATCGGCGCAGTGGTGGCGCTGCTGTTCGGGCCGCGTCTGATCG
AGGTCTACCGCAGCACGTTCGGCCTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(13-95)

Type IV leader peptidase family (Peptidase_A24)

(237-341)

Type IV leader peptidase family (Peptidase_A24)

(110-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.974

100

0.602