Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MF271_RS05565 Genome accession   NZ_CP092190
Coordinates   568055..568681 (+) Length   208 a.a.
NCBI ID   WP_239050330.1    Uniprot ID   -
Organism   Deinococcus sp. KNUC1210     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 563055..573681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF271_RS05540 (MF271_05540) - 563787..564263 (-) 477 WP_239050325.1 GNAT family N-acetyltransferase -
  MF271_RS05545 (MF271_05545) - 564275..565228 (-) 954 WP_239050326.1 oxidoreductase -
  MF271_RS05550 (MF271_05550) - 565283..566044 (-) 762 WP_239050327.1 nitroreductase family protein -
  MF271_RS05555 (MF271_05555) - 566139..566444 (+) 306 WP_239050328.1 hypothetical protein -
  MF271_RS05560 (MF271_05560) - 566475..567923 (-) 1449 WP_239050329.1 PLP-dependent aminotransferase family protein -
  MF271_RS05565 (MF271_05565) comF 568055..568681 (+) 627 WP_239050330.1 ComF family protein Machinery gene
  MF271_RS05570 (MF271_05570) - 568755..571676 (+) 2922 WP_239050331.1 insulinase family protein -
  MF271_RS05575 (MF271_05575) - 571733..572125 (+) 393 WP_239050332.1 hypothetical protein -
  MF271_RS05580 (MF271_05580) - 572230..572646 (-) 417 WP_370657364.1 GNAT family N-acetyltransferase -
  MF271_RS05585 (MF271_05585) - 572656..573030 (-) 375 WP_239050333.1 hypothetical protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22118.60 Da        Isoelectric Point: 11.3543

>NTDB_id=656293 MF271_RS05565 WP_239050330.1 568055..568681(+) (comF) [Deinococcus sp. KNUC1210]
MLQRLARFILPRRCPGCGGQVEQAAGLCSACLKQLAPQVQRHSPLSSRAEAHLVVLGPYRGTLGRSVRALKYGGAREVAQ
ALGTRLGEGVPQSWNIQAVTGVPLHEARLRERGFNQAELLGRAAAGGLGVPYLTTLARQRSTGAQARRHARERLTALGDS
FVVLPDAALPERLLVVDDVMTTGTTLLACADVLRAGGAAQVWFAVVAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=656293 MF271_RS05565 WP_239050330.1 568055..568681(+) (comF) [Deinococcus sp. KNUC1210]
ATGCTTCAGCGCCTCGCCCGCTTTATCCTGCCGCGCCGCTGCCCCGGATGCGGCGGACAGGTCGAGCAGGCCGCCGGGCT
GTGCAGCGCCTGCCTGAAGCAGCTTGCTCCGCAGGTGCAGCGGCACTCTCCGCTGTCCAGCCGGGCCGAAGCGCATCTGG
TGGTGCTGGGGCCGTACCGGGGCACGCTGGGGCGCTCGGTGCGTGCCCTGAAGTACGGCGGTGCGCGGGAAGTGGCGCAG
GCGCTGGGCACGCGGCTGGGTGAAGGCGTGCCGCAGAGCTGGAATATTCAGGCCGTGACAGGCGTACCGCTGCACGAAGC
GCGGCTGCGGGAGCGCGGGTTCAATCAGGCCGAACTGCTGGGCCGGGCTGCCGCCGGGGGACTGGGCGTGCCGTATCTGA
CCACACTGGCCCGGCAGCGTTCCACCGGAGCGCAGGCCAGACGCCATGCCCGCGAACGTCTGACAGCGCTTGGCGACAGC
TTTGTGGTGCTGCCGGATGCGGCGCTTCCAGAACGCCTGCTCGTAGTGGACGACGTGATGACAACCGGAACGACGCTTCT
GGCCTGTGCCGACGTGCTGCGGGCAGGAGGCGCGGCGCAGGTGTGGTTCGCGGTGGTGGCGAGGTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(6-39)

Phosphoribosyl transferase domain (Pribosyltran)

(172-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.863

98.077

0.558