Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   OHB07_RS31365 Genome accession   NZ_CP108203
Coordinates   6958357..6959451 (+) Length   364 a.a.
NCBI ID   WP_329235099.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00111     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 6953357..6964451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB07_RS31350 (OHB07_31315) - 6955018..6956523 (+) 1506 WP_406465391.1 ABC transporter substrate-binding protein -
  OHB07_RS31355 (OHB07_31320) - 6956520..6957473 (+) 954 WP_386861192.1 ABC transporter permease -
  OHB07_RS31360 (OHB07_31325) - 6957470..6958360 (+) 891 WP_403910437.1 ABC transporter permease -
  OHB07_RS31365 (OHB07_31330) amiE 6958357..6959451 (+) 1095 WP_329235099.1 ABC transporter ATP-binding protein Regulator
  OHB07_RS31370 (OHB07_31335) - 6959523..6960479 (+) 957 WP_329239143.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  OHB07_RS31375 (OHB07_31340) - 6960574..6962439 (+) 1866 WP_329235102.1 gamma-glutamyltransferase -
  OHB07_RS31380 (OHB07_31345) - 6962485..6963336 (+) 852 WP_406465394.1 inositol monophosphatase family protein -
  OHB07_RS31385 (OHB07_31350) - 6963337..6964155 (-) 819 WP_406465396.1 nucleotidyltransferase domain-containing protein -

Sequence


Protein


Download         Length: 364 a.a.        Molecular weight: 38516.00 Da        Isoelectric Point: 6.4147

>NTDB_id=656250 OHB07_RS31365 WP_329235099.1 6958357..6959451(+) (amiE) [Streptomyces sp. NBC_00111]
MTETVLEPVRKAAAEPALSVRDLSVSFHSDTRTVHAVDGVSYDLAPGEVLAVVGESGCGKSVTSMATMGLLPPTARIGGS
IRLGGRELVGASEKELQKVRGKDIAMIFQEPMTSLNPVLTVGRQIGEVLRRHQGLSRKEARARAVELLELVGIPAPARRI
DEYPHQLSGGMRQRVMIAIAVACDPAVLIADEPTTALDVTVQAGILEVLQSLRERLGTAIVLVTHDLGVVADAADRVLVM
YAGRAVEQAPVHDLFASGRHPYTRGLLGAVLRPGGEGKRRLPEIPGLVPSLDSQPDACTFAPRCSRADDTCTGSRPGFRA
VDPEAGADAAHRAACWHPYAGTDAEAAPETPARPEARPDQEAGK

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=656250 OHB07_RS31365 WP_329235099.1 6958357..6959451(+) (amiE) [Streptomyces sp. NBC_00111]
ATGACCGAGACCGTTCTCGAACCCGTGCGGAAGGCGGCGGCCGAGCCGGCGCTGAGCGTGCGCGACCTGTCGGTCTCCTT
CCACTCCGACACCCGCACCGTGCACGCGGTCGACGGGGTCTCCTACGACCTCGCGCCGGGCGAAGTCCTCGCCGTGGTGG
GGGAGTCGGGCTGCGGCAAGTCCGTCACCTCGATGGCCACCATGGGGCTGCTGCCTCCGACCGCCCGGATCGGCGGTTCG
ATCAGGCTCGGCGGGCGTGAGCTGGTCGGCGCCTCGGAGAAGGAGCTGCAGAAGGTCCGCGGCAAGGACATCGCGATGAT
CTTCCAGGAGCCGATGACCTCGCTGAACCCGGTCCTCACCGTCGGCCGGCAGATCGGCGAGGTGCTGCGCCGGCACCAGG
GGCTGAGCCGCAAGGAGGCCAGGGCGCGCGCCGTGGAGCTCCTCGAACTCGTCGGCATCCCCGCACCTGCCCGTCGCATC
GACGAGTACCCGCACCAGCTCTCCGGCGGCATGCGGCAGCGCGTCATGATCGCCATCGCGGTGGCCTGCGACCCCGCCGT
CCTCATCGCCGACGAACCCACGACCGCGCTGGACGTCACCGTCCAGGCCGGCATCCTCGAAGTCCTCCAGTCCCTGCGCG
AGCGCCTCGGCACCGCCATCGTCCTGGTCACCCACGACCTCGGGGTCGTCGCCGACGCGGCCGACCGGGTGCTCGTGATG
TACGCCGGGCGCGCCGTCGAACAGGCCCCGGTCCACGACCTGTTCGCCTCCGGGCGCCACCCCTACACCCGTGGTCTGCT
CGGCGCCGTGTTGCGGCCCGGCGGTGAGGGCAAGCGGCGGCTCCCGGAGATCCCCGGCCTCGTCCCCAGCCTGGACAGCC
AGCCCGACGCCTGTACCTTCGCCCCCCGCTGCTCCCGCGCCGACGACACCTGCACGGGCAGCCGCCCCGGCTTCCGCGCC
GTCGACCCCGAGGCCGGGGCGGACGCGGCGCACCGGGCCGCCTGCTGGCACCCGTACGCGGGTACCGATGCCGAGGCCGC
CCCCGAAACCCCCGCGCGCCCCGAGGCGCGCCCCGACCAGGAGGCCGGAAAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.04

88.187

0.415

  amiE Streptococcus thermophilus LMG 18311

46.729

88.187

0.412

  amiE Streptococcus thermophilus LMD-9

46.729

88.187

0.412

  oppD Streptococcus mutans UA159

45.679

89.011

0.407