Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHB07_RS12125 Genome accession   NZ_CP108203
Coordinates   2712792..2714525 (+) Length   577 a.a.
NCBI ID   WP_329228636.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00111     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2707792..2719525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB07_RS12095 (OHB07_12075) - 2708916..2709803 (-) 888 WP_406462278.1 hypothetical protein -
  OHB07_RS12115 (OHB07_12095) - 2710861..2711163 (+) 303 WP_329238592.1 YtxH domain-containing protein -
  OHB07_RS12120 (OHB07_12100) - 2711230..2712678 (+) 1449 WP_405694990.1 FGGY family carbohydrate kinase -
  OHB07_RS12125 (OHB07_12105) rcrP 2712792..2714525 (+) 1734 WP_329228636.1 ABC transporter ATP-binding protein Regulator
  OHB07_RS12130 (OHB07_12110) - 2714525..2716447 (+) 1923 WP_406462280.1 ABC transporter ATP-binding protein -
  OHB07_RS12135 (OHB07_12115) - 2716493..2717584 (-) 1092 WP_406466279.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62544.62 Da        Isoelectric Point: 5.3681

>NTDB_id=656202 OHB07_RS12125 WP_329228636.1 2712792..2714525(+) (rcrP) [Streptomyces sp. NBC_00111]
MLIKLLRTYLGPYRQPIMLLVLFQLLQTCASLYLPSLNADIIDNGVVRGDTGYILQFGAVMIAVSVIQIVCNIGAVYYGA
RTASALGRDVRASVFGQVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGVIMALGQDVPLSAV
LLAVLPVLGISVSLIVRRMRPLFRTMQVRLDTVNRVLREQITGNRVIRAFIRDGYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFIMVPRAEVCAERIQEVLETESSVVP
PTAPVTKLLTHGHLEIRGAEFRYPGAEEPVLRSVDLAARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGEVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVERLEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQKPEIYLFDDSFSALDYATDAALRGALSHETSGATVVIVAQRVSTIRDADRILVLDEGRVVGTGTHGELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=656202 OHB07_RS12125 WP_329228636.1 2712792..2714525(+) (rcrP) [Streptomyces sp. NBC_00111]
GTGCTCATAAAACTCCTGCGGACCTATCTGGGTCCGTACAGACAGCCCATCATGCTGCTGGTGCTGTTCCAGCTCCTGCA
GACCTGCGCGAGCCTCTACCTGCCCAGCCTCAACGCGGACATCATCGACAACGGTGTCGTGCGGGGGGACACGGGTTACA
TCCTGCAGTTCGGCGCGGTGATGATCGCGGTCAGCGTCATCCAGATCGTCTGCAACATCGGGGCCGTCTACTACGGCGCC
CGGACCGCCTCCGCGCTCGGGCGCGACGTGCGGGCGTCGGTCTTCGGCCAGGTGCAGTCGTTCTCCGCGCGCGAGGTGGG
ACGGTTCGGGGCTCCTTCGCTGATCACCCGGACGACCAATGACGTGCAGCAGGTCCAGATGCTCGTCCTGATGGCGTTCA
CCCTGATGGTCTCGGCGCCCATCATGTGCGTCGGCGGCGTCATCATGGCGCTCGGCCAGGACGTCCCCCTGTCGGCGGTG
CTGCTGGCCGTGCTGCCCGTGCTCGGGATCTCGGTGAGCCTCATCGTGAGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGTGCGGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCATCCGTGACG
GCTACGAGGAGGAACGCTTCCGCGGCGCCAACACGGAACTGACGGACGTCGCCCTGTCGACGGGCCGGCTGATGGCCCTC
ATGTTCCCGACCGTGATGACGGTGGTGAACCTGTCGTCCATCGCGGTGGTCTGGTTCGGTGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGGGCGCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTCATGGCGGTGATGATGGCCACCTTCA
TGTTCATCATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGCGTGGTGCCG
CCCACCGCCCCGGTCACGAAGCTGCTCACACACGGCCACCTGGAGATACGGGGCGCGGAGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGTTCCGTCGATCTCGCGGCTCGGCCCGGGGAGACGACCGCGATCATCGGCTCGACCGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTGCCGCGGCTGTTCGACGCGACGGACGGCGAGGTGCTCGTCGACGGTACGGACGTGAGG
ACGCTGGATCCGGTCCTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCGGGGACGGTCGCGAC
GAATCTGCGCTACGGCAATCCGGACGCGACCGACGAAGAACTGTGGCACGCCCTGGAGGTGGCGCAGGCGAAGGAGTTCG
TGGAGCGGCTGGAGCACGGCCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTGTCCGGTGGCCAGCGGCAGCGGCTC
GCGATCGCGAGGACGCTGGTGCAGAAGCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACGGA
CGCCGCGCTGCGCGGCGCCCTGTCCCACGAGACGTCGGGGGCGACCGTGGTGATCGTGGCACAGCGGGTGTCCACGATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCAGGGTCGTCGGGACGGGCACGCACGGCGAGCTGATGGACGGCAAC
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.893

100

0.412