Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHB07_RS02760 Genome accession   NZ_CP108203
Coordinates   606215..607234 (+) Length   339 a.a.
NCBI ID   WP_329225569.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00111     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 601215..612234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB07_RS02750 (OHB07_02735) - 602681..605032 (+) 2352 WP_406460689.1 AbfB domain-containing protein -
  OHB07_RS02755 (OHB07_02740) - 605171..606001 (-) 831 WP_403914148.1 phytanoyl-CoA dioxygenase family protein -
  OHB07_RS02760 (OHB07_02745) cytR 606215..607234 (+) 1020 WP_329225569.1 LacI family DNA-binding transcriptional regulator Regulator
  OHB07_RS02765 (OHB07_02750) - 607343..607888 (-) 546 WP_406460692.1 DUF6886 family protein -
  OHB07_RS02770 (OHB07_02755) - 608067..611348 (-) 3282 WP_329238373.1 LamG-like jellyroll fold domain-containing protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 35752.83 Da        Isoelectric Point: 6.2416

>NTDB_id=656183 OHB07_RS02760 WP_329225569.1 606215..607234(+) (cytR) [Streptomyces sp. NBC_00111]
MAARLKDVAALAGVSVRTVSNVVSNAAAVAPATRARVMAAVEELGYRPNLAARNLRQGRTGLIGVVVPEIHSPYFGALAG
LLIDAAQERGWTVLLERTGGRPELERRLLDGSGGHQLDGMIISPWSTSPADLASLAGGLPLVVLGELEPDGTIDHVALDN
VGAARDAARHLVARGRRRIAAIGLQSGLGHGTAELRAEGFRHGLREAGLSPVAEVEVADLHRAEGARALRHLLELPEPPD
AVFCFSDELALGALRVAAEQGVRVPEDLALMGFDDIEDGRFAAPSLTTVAPDREQIAERAVQCLTERVFGRLDTLPARRI
VVPHRVLGRESTGAAVPPA

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=656183 OHB07_RS02760 WP_329225569.1 606215..607234(+) (cytR) [Streptomyces sp. NBC_00111]
GTGGCAGCGAGACTCAAGGACGTCGCCGCGCTCGCCGGCGTGTCCGTCCGGACCGTCTCCAACGTGGTGAGCAACGCCGC
GGCCGTGGCCCCGGCGACGCGCGCCCGGGTCATGGCGGCGGTGGAGGAACTCGGCTACCGCCCCAACCTCGCCGCCCGCA
ACCTCCGGCAGGGGCGCACGGGTCTCATCGGTGTGGTCGTGCCCGAGATCCACTCCCCCTACTTCGGCGCGCTGGCCGGT
CTCCTCATCGACGCGGCACAGGAGCGCGGCTGGACGGTGCTCCTGGAGCGGACCGGGGGGCGTCCCGAGCTGGAACGGCG
GCTCCTCGACGGGTCCGGGGGGCACCAGCTCGACGGGATGATCATCAGCCCCTGGTCCACCTCCCCGGCCGATCTGGCCT
CACTCGCCGGGGGTCTGCCGCTGGTGGTCCTGGGCGAGCTGGAGCCGGACGGGACCATCGACCATGTCGCCCTGGACAAC
GTGGGGGCGGCCAGGGACGCCGCACGCCATCTGGTCGCGCGGGGCCGCCGGCGCATCGCGGCGATCGGCCTGCAGTCCGG
ACTGGGCCACGGCACGGCGGAACTGCGCGCGGAGGGGTTCCGTCACGGGCTGCGGGAGGCCGGCCTGAGCCCGGTGGCCG
AGGTGGAGGTGGCAGACCTCCACCGGGCGGAGGGGGCGCGGGCGCTGCGTCACCTGCTGGAGCTGCCCGAGCCGCCCGAC
GCCGTCTTCTGCTTCAGCGACGAGCTCGCCCTCGGTGCTCTGCGCGTCGCGGCCGAACAGGGCGTGCGGGTGCCGGAGGA
CCTGGCGCTGATGGGGTTCGACGACATCGAGGACGGCAGATTCGCCGCCCCGTCCCTCACCACGGTCGCCCCGGACCGGG
AGCAGATCGCCGAGCGGGCGGTGCAGTGCCTGACCGAGCGCGTCTTCGGACGCCTCGACACCCTGCCCGCACGGCGGATC
GTGGTCCCGCACCGTGTGCTGGGGCGCGAGAGCACCGGAGCCGCCGTCCCACCGGCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-49)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.209

100

0.378