Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHA48_RS41200 Genome accession   NZ_CP108201
Coordinates   8858229..8859251 (+) Length   340 a.a.
NCBI ID   WP_266801653.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00114     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8853229..8864251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA48_RS41185 (OHA48_41180) - 8853968..8855815 (+) 1848 WP_266801650.1 RICIN domain-containing protein -
  OHA48_RS41190 (OHA48_41185) - 8855860..8856144 (-) 285 WP_266801651.1 hypothetical protein -
  OHA48_RS41195 (OHA48_41190) - 8856916..8858046 (+) 1131 WP_266801652.1 GH12 family glycosyl hydrolase domain-containing protein -
  OHA48_RS41200 (OHA48_41195) cytR 8858229..8859251 (+) 1023 WP_266801653.1 LacI family DNA-binding transcriptional regulator Regulator
  OHA48_RS41205 (OHA48_41200) - 8859901..8861472 (+) 1572 WP_266801654.1 arabinofuranosidase catalytic domain-containing protein -
  OHA48_RS41210 (OHA48_41205) - 8861539..8863989 (+) 2451 WP_266801655.1 RICIN domain-containing protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36943.00 Da        Isoelectric Point: 6.6228

>NTDB_id=656179 OHA48_RS41200 WP_266801653.1 8858229..8859251(+) (cytR) [Streptomyces sp. NBC_00114]
MGRRRPGAPTLEEVAAHAGVGRGTVSRVVNNAAGVADSTRRAVQRAIEELGYVPNLAARSLAGQRADAVALVLTEPDWRQ
FAEPFFSEIVSSIGDGLADTGMQLMLTLVRSKSERQRFLEYARGGRVDGALLMSVHAGDRLPDMLAEARLPTVLLGRRSA
DEYVSHVDADNLGGARSAVSYLLKQGRRAIATITGPLDMYVAQARLQGYRNALELTGLKSPHSLVAEGDFSQDSGRRAMT
ELLERHPEIDGVLAASDTTAAGALQALRAAGRRVPQDVAVIGFDDFPLAQRTEPRLTTVRQPLEEIGRAMIRLLLEEIEE
PYVAWRHVILHTELVVRESA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=656179 OHA48_RS41200 WP_266801653.1 8858229..8859251(+) (cytR) [Streptomyces sp. NBC_00114]
ATGGGCAGGCGACGCCCTGGGGCGCCCACGCTGGAAGAGGTGGCCGCCCACGCCGGGGTGGGGCGAGGCACGGTCTCCCG
CGTCGTCAACAACGCGGCCGGCGTGGCCGATTCGACACGCCGGGCCGTACAGCGAGCCATCGAGGAACTGGGTTACGTGC
CCAATCTCGCCGCCCGGTCCCTGGCCGGGCAGCGGGCCGACGCCGTGGCCCTCGTCCTGACGGAACCGGACTGGAGGCAG
TTCGCGGAGCCGTTCTTCTCGGAAATCGTGAGTTCGATCGGCGACGGGCTGGCCGACACCGGCATGCAACTGATGCTGAC
TCTGGTCCGCTCGAAGTCCGAGCGACAGCGCTTTTTGGAGTACGCGCGCGGCGGCCGGGTCGACGGCGCCCTGCTGATGT
CCGTGCACGCGGGCGATCGGCTGCCGGACATGCTCGCCGAGGCGCGGTTGCCGACCGTGCTGCTGGGGCGTCGCTCGGCC
GACGAGTACGTCAGCCACGTGGACGCGGACAACCTGGGCGGCGCCCGCAGTGCCGTCTCCTACCTGCTGAAACAGGGCCG
TCGAGCGATCGCCACCATTACGGGACCGCTGGACATGTACGTCGCGCAGGCAAGGCTTCAGGGTTACCGCAACGCCCTGG
AGCTGACCGGTCTGAAGAGTCCGCACTCCCTGGTTGCCGAAGGCGATTTCTCGCAGGACAGCGGTCGCCGTGCCATGACG
GAGCTCCTGGAACGGCACCCGGAGATCGACGGCGTCCTCGCCGCGTCGGACACCACGGCGGCCGGGGCGCTGCAGGCGCT
GCGGGCCGCGGGACGGCGCGTTCCCCAGGACGTCGCCGTGATCGGCTTCGACGACTTTCCGCTGGCCCAGCGCACCGAGC
CGCGCCTGACCACAGTGCGCCAGCCGTTGGAGGAGATAGGACGAGCCATGATCAGGCTGCTGCTGGAGGAGATCGAGGAG
CCGTACGTGGCCTGGCGCCACGTCATCCTGCATACGGAGCTGGTCGTTCGTGAATCGGCGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-339)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.278

99.412

0.371