Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MGG13_RS07260 Genome accession   NZ_CP092179
Coordinates   1380365..1382734 (-) Length   789 a.a.
NCBI ID   WP_239034451.1    Uniprot ID   -
Organism   Macrococcus brunensis strain 18KM571     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1375365..1387734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGG13_RS07240 (MGG13_07240) - 1376426..1376755 (-) 330 WP_133431660.1 DUF1292 domain-containing protein -
  MGG13_RS07245 (MGG13_07245) ruvX 1376768..1377190 (-) 423 WP_133431661.1 Holliday junction resolvase RuvX -
  MGG13_RS07250 (MGG13_07250) - 1377183..1377452 (-) 270 WP_133431662.1 IreB family regulatory phosphoprotein -
  MGG13_RS07255 (MGG13_07255) alaS 1377515..1380133 (-) 2619 WP_239034450.1 alanine--tRNA ligase -
  MGG13_RS07260 (MGG13_07260) recD2 1380365..1382734 (-) 2370 WP_239034451.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MGG13_RS07265 (MGG13_07265) - 1382737..1383399 (-) 663 WP_239035694.1 tetratricopeptide repeat protein -
  MGG13_RS07270 (MGG13_07270) mnmA 1383450..1384562 (-) 1113 WP_239034452.1 tRNA 2-thiouridine(34) synthase MnmA -
  MGG13_RS07275 (MGG13_07275) - 1384562..1385710 (-) 1149 WP_239034453.1 cysteine desulfurase family protein -
  MGG13_RS07280 (MGG13_07280) - 1385842..1386729 (+) 888 WP_239034454.1 nuclease-related domain-containing protein -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 89064.52 Da        Isoelectric Point: 4.5482

>NTDB_id=656136 MGG13_RS07260 WP_239034451.1 1380365..1382734(-) (recD2) [Macrococcus brunensis strain 18KM571]
MENMSLFEQSYIKGTVTRLLFQNADNYYTVLKVEVLESNEDFDDEATVIGYLPQIAEGDTYTFTGKIVTHAKYGKQLSAE
KFEKDMPQTRDGIIHYLSSDLFKGIGKKLAQQIVDTLGEDALTKIMHDKEVLKQVPKLSTDKQEMIYQTVSENQAIEKTM
IQLNEWGFGPQLAMKIFQFYKEETLKVIEKSPYQLVMDIQGIGFTKADELAKKLGIAGSHPERLRAALVYTLEQACLQNG
HTYVEDQALLEAAYNILTASGEDVDSGLLVNKLTELSEEKIVVSDDNRIYMPSLFFAEVKTVQVLHRLQQTEDKIKQFEK
SEVLLAIGELEEQFDVTYAEKQREALETAMSHKMMILSGGPGTGKTTVIRGIVNLYAELHGLSLDYKDYKGTDFPVAVAA
PTGRASKRLSESTGLEATTIHRLIGWTRENKPDDILENDISAKLVIIDEMSMVDTWLMFQLMRAVPNDCQIIFVGDQDQL
PSVGPGQVFRDLIDSKIMPQVELAEVYRQQEGSSIIELAHQIKKNQTFDISARYNDRSFIPCTTDQIPSVINQVVSRAVD
KGYDMRDIQVLAPIYKGKAGIKFLNKELQQILNPKEDDKRELEFGEVIYRDGDKVLQLVNRPEDNVFNGDIGEVVGIFMA
AENALNKDVIIVDYDGNEVTYTKQDLTELTHAYCCSIHKAQGSEFPIVIMPVVKAYYRMLQKNILYTGLTRAKQSLILCG
ERQAFDDGIKRMGLERMTSFAQHLCDYFGGEEETADIPVGELTEENMHLISPMINMDGISPYDYETVDA

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=656136 MGG13_RS07260 WP_239034451.1 1380365..1382734(-) (recD2) [Macrococcus brunensis strain 18KM571]
TTGGAGAACATGTCTTTATTCGAACAGTCCTATATTAAAGGCACAGTCACTCGTCTTCTTTTTCAGAATGCTGACAACTA
CTATACCGTGCTGAAAGTAGAAGTGCTGGAATCGAATGAAGACTTTGATGACGAAGCCACGGTAATCGGCTATTTACCAC
AGATAGCTGAAGGAGATACCTATACTTTCACAGGCAAGATCGTCACGCACGCCAAATATGGCAAGCAGTTATCTGCTGAA
AAGTTTGAGAAAGATATGCCGCAGACAAGAGACGGGATCATCCATTATTTATCGAGCGATCTGTTTAAAGGCATCGGAAA
GAAACTCGCACAGCAGATTGTTGATACGCTCGGAGAAGATGCGCTGACTAAGATCATGCATGATAAAGAAGTGCTGAAGC
AGGTGCCGAAACTATCAACAGATAAGCAGGAAATGATTTATCAGACGGTCAGTGAAAACCAGGCGATTGAGAAGACGATG
ATTCAATTGAACGAGTGGGGTTTCGGTCCGCAGCTTGCGATGAAAATTTTTCAGTTCTATAAAGAAGAAACGCTGAAAGT
TATTGAAAAGTCACCTTATCAGCTCGTGATGGATATACAGGGTATCGGTTTTACGAAGGCAGATGAACTGGCGAAGAAAC
TCGGTATTGCAGGCAGTCACCCTGAACGGCTGCGTGCCGCACTTGTCTATACGCTTGAGCAGGCATGTCTGCAGAATGGA
CATACTTACGTAGAAGATCAGGCACTCTTAGAAGCAGCGTACAATATACTGACTGCATCAGGAGAGGACGTTGATTCCGG
CTTACTCGTCAATAAGTTAACAGAGCTCAGTGAAGAGAAAATAGTCGTGAGTGACGACAATCGCATCTATATGCCGAGTC
TTTTCTTTGCGGAAGTGAAGACCGTACAGGTGCTGCATCGTCTGCAGCAGACTGAAGATAAGATCAAACAGTTTGAAAAA
TCAGAAGTGCTGCTCGCGATCGGTGAATTAGAAGAGCAGTTCGATGTGACTTATGCAGAAAAGCAGCGCGAGGCACTGGA
GACGGCGATGAGTCACAAGATGATGATACTTTCTGGCGGCCCTGGTACAGGAAAAACGACTGTCATCCGCGGTATCGTCA
ATTTATATGCCGAATTGCACGGCCTTAGTCTCGATTATAAGGACTATAAGGGGACAGACTTCCCTGTCGCTGTTGCAGCG
CCGACAGGACGTGCATCTAAGCGACTGTCAGAATCCACCGGACTTGAAGCAACGACTATTCACCGGCTGATCGGCTGGAC
GCGTGAAAATAAACCGGATGACATCCTGGAAAATGACATCTCAGCGAAGCTGGTCATTATTGATGAGATGTCTATGGTTG
ATACGTGGCTGATGTTTCAGCTGATGCGCGCTGTACCGAATGACTGTCAGATCATCTTTGTCGGCGACCAGGACCAGCTG
CCGTCAGTAGGACCGGGCCAGGTTTTTCGTGACTTGATTGATTCTAAAATCATGCCGCAGGTTGAACTTGCAGAAGTCTA
TCGTCAGCAGGAAGGCTCATCTATTATAGAACTGGCGCATCAGATCAAGAAGAATCAGACTTTTGATATTTCAGCGCGTT
ATAATGACCGTTCTTTTATACCTTGTACTACAGACCAGATTCCCTCTGTCATCAACCAGGTAGTATCAAGAGCGGTGGAT
AAAGGCTATGACATGCGGGATATACAAGTGCTGGCACCGATTTACAAAGGAAAAGCTGGTATCAAATTTTTAAATAAAGA
ACTGCAGCAGATTTTAAACCCGAAAGAAGATGACAAACGAGAACTGGAGTTCGGCGAGGTTATCTACCGTGACGGTGATA
AAGTACTGCAGCTGGTCAACCGGCCGGAAGACAATGTCTTTAATGGTGATATCGGCGAAGTAGTGGGGATTTTTATGGCG
GCAGAAAATGCGCTGAACAAAGATGTGATCATTGTAGACTATGACGGCAACGAAGTGACCTACACGAAGCAGGACCTGAC
TGAGCTGACACACGCATACTGCTGTTCCATCCACAAGGCGCAGGGTTCAGAATTTCCGATTGTGATCATGCCGGTCGTCA
AAGCCTATTACCGCATGCTGCAGAAAAATATCCTTTATACAGGACTGACGCGTGCGAAACAATCCCTTATTCTTTGCGGG
GAACGGCAGGCTTTTGATGACGGGATAAAGCGCATGGGTCTCGAACGCATGACCTCCTTCGCTCAGCATTTGTGTGATTA
CTTCGGCGGTGAGGAGGAGACCGCCGATATACCGGTCGGTGAACTGACAGAAGAGAATATGCATCTGATTTCACCGATGA
TCAATATGGACGGGATTTCTCCTTATGACTATGAAACAGTTGACGCGTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

AAA domain (AAA_30)

(338-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.652

100

0.529