Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MGG12_RS07530 Genome accession   NZ_CP092172
Coordinates   1415126..1417495 (-) Length   789 a.a.
NCBI ID   WP_239046990.1    Uniprot ID   -
Organism   Macrococcus brunensis strain 18KM1742     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1410126..1422495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGG12_RS07510 (MGG12_07510) - 1411187..1411516 (-) 330 WP_133431660.1 DUF1292 domain-containing protein -
  MGG12_RS07515 (MGG12_07515) ruvX 1411529..1411951 (-) 423 WP_133431661.1 Holliday junction resolvase RuvX -
  MGG12_RS07520 (MGG12_07520) - 1411944..1412213 (-) 270 WP_133431662.1 IreB family regulatory phosphoprotein -
  MGG12_RS07525 (MGG12_07525) alaS 1412276..1414894 (-) 2619 WP_239046989.1 alanine--tRNA ligase -
  MGG12_RS07530 (MGG12_07530) recD2 1415126..1417495 (-) 2370 WP_239046990.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MGG12_RS07535 (MGG12_07535) - 1417498..1418160 (-) 663 WP_239048075.1 tetratricopeptide repeat protein -
  MGG12_RS07540 (MGG12_07540) mnmA 1418211..1419323 (-) 1113 WP_239046991.1 tRNA 2-thiouridine(34) synthase MnmA -
  MGG12_RS07545 (MGG12_07545) - 1419323..1420471 (-) 1149 WP_239046992.1 cysteine desulfurase family protein -
  MGG12_RS07550 (MGG12_07550) - 1420603..1421490 (+) 888 WP_239046993.1 nuclease-related domain-containing protein -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 89065.46 Da        Isoelectric Point: 4.5302

>NTDB_id=656107 MGG12_RS07530 WP_239046990.1 1415126..1417495(-) (recD2) [Macrococcus brunensis strain 18KM1742]
MENMSLFEQSYIKGTVTRLLFQNADNYYTVLKVEVLESNEDFDDEATVIGYLPQIAEGDTYTFTGKIVTHAKYGKQLSAE
KFEKDMPQTRDGIIHYLSSDLFKGIGKKLAQQIVDTLGEDALTKIMHDKEVLKQVPKLSTDKQEMIYQTVSENQAIEKTM
IQLNEWGFGPQLAMKIFQFYKEETLKVIEKSPYQLVMDIQGIGFTKADELAKKLGIAGSHPERLRAALVYTLEQTCLQNG
HTYVEGQALLEAAYNILTASGEDVDSGLLVNKLTELSEEKIVVSDDNRIYMPSLFFAEVKTVQVLHRLQQTEDKIKQFEK
SEVLLAIGELEEQFDVTYAEKQREALETAMSHKMMILSGGPGTGKTTVIRGIVNLYAELHGLSLDYKDYEGTDFPVAVAA
PTGRASKRLSESTGLEATTIHRLIGWTRENKPDDILENDISAKLVIIDEMSMVDTWLMFQLMRAVPNDCQIIFVGDQDQL
PSVGPGQVFRDLIDSKIMPQVELAEVYRQQEGSSIIELAHQIKKNQTFDISARYNDRSFIPCTTDQIPSVINQVVSRAVD
KGYDMRDIQVLAPIYKGKAGIKFLNKELQQILNPKEDDKRELEFGEVIYRDGDKVLQLVNRPEDNVFNGDIGEVVGIFMA
AENALNKDVIIVDYDGNEVTYTRQDLTELTHAYCCSIHKAQGSEFPIVIMPVVKAYYRMLQKNILYTGLTRAKQSLILCG
ERQAFDDGIKRMGLERMTSFAQHLCDYFGGEEETADIPVGELTEENMHLISPMINMDGISPYDYETVDA

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=656107 MGG12_RS07530 WP_239046990.1 1415126..1417495(-) (recD2) [Macrococcus brunensis strain 18KM1742]
TTGGAGAACATGTCTTTATTCGAACAGTCCTATATTAAAGGCACAGTCACTCGTCTTCTTTTTCAGAATGCTGACAACTA
CTATACCGTGCTGAAAGTAGAAGTGCTGGAATCGAATGAAGACTTTGATGACGAAGCCACGGTAATCGGCTATTTACCAC
AGATAGCTGAAGGAGATACCTATACTTTCACAGGCAAGATCGTCACGCACGCCAAATATGGCAAGCAGTTATCTGCTGAA
AAGTTTGAGAAAGATATGCCGCAAACAAGAGACGGGATTATCCATTATTTATCGAGCGATCTGTTTAAAGGCATCGGAAA
GAAACTCGCACAGCAGATTGTTGATACGCTCGGGGAAGATGCGCTGACTAAGATCATGCATGATAAAGAAGTGCTGAAGC
AGGTGCCGAAACTATCAACAGATAAGCAGGAAATGATTTATCAGACGGTCAGTGAAAACCAGGCGATTGAGAAGACGATG
ATTCAATTGAACGAGTGGGGCTTCGGTCCGCAGCTTGCGATGAAAATTTTTCAGTTCTATAAAGAAGAAACGCTGAAAGT
CATTGAAAAATCTCCTTATCAGCTTGTGATGGATATACAGGGTATCGGTTTTACGAAGGCAGATGAACTGGCGAAGAAAC
TGGGCATTGCAGGCAGTCACCCTGAACGGCTGCGTGCCGCACTTGTCTATACGCTTGAGCAGACATGTCTGCAGAATGGA
CACACTTACGTAGAGGGTCAGGCACTCTTAGAAGCAGCGTACAATATACTGACTGCATCAGGAGAAGACGTTGATTCCGG
CTTACTCGTCAATAAGTTAACAGAGCTCAGTGAAGAGAAAATAGTCGTGAGTGACGACAATCGCATCTATATGCCGAGTC
TTTTCTTTGCGGAAGTGAAGACCGTACAGGTGCTGCATCGTCTGCAGCAGACTGAAGATAAGATCAAACAGTTTGAAAAA
TCAGAAGTGCTGCTCGCGATCGGTGAATTAGAAGAGCAGTTCGATGTGACTTATGCAGAAAAGCAGCGCGAGGCACTGGA
GACGGCGATGAGTCACAAGATGATGATACTTTCTGGCGGCCCTGGTACAGGAAAAACGACTGTCATCCGCGGTATCGTCA
ATTTATATGCCGAATTGCACGGCCTTAGTCTCGATTATAAGGACTATGAGGGGACAGACTTCCCTGTCGCTGTTGCAGCG
CCGACAGGACGTGCATCTAAGCGACTGTCAGAATCCACCGGACTTGAAGCAACGACTATTCACCGGCTGATCGGCTGGAC
GCGTGAAAATAAACCGGATGACATCCTGGAAAATGACATCTCAGCGAAGCTGGTCATTATTGATGAGATGTCTATGGTTG
ATACGTGGCTGATGTTTCAGCTGATGCGCGCTGTACCGAATGACTGTCAGATCATCTTTGTCGGCGACCAGGACCAGCTG
CCGTCAGTAGGACCGGGCCAGGTTTTTCGTGACTTGATTGATTCTAAAATCATGCCGCAGGTTGAACTTGCAGAAGTCTA
TCGTCAGCAGGAAGGCTCATCTATTATAGAACTGGCGCATCAGATCAAAAAGAATCAGACTTTTGATATTTCAGCGCGTT
ATAATGACCGTTCTTTTATACCTTGTACTACAGACCAGATTCCCTCTGTCATCAACCAGGTAGTATCAAGAGCGGTGGAT
AAAGGCTATGACATGCGGGATATACAAGTGCTGGCACCGATTTACAAAGGAAAAGCTGGTATCAAATTTTTAAATAAAGA
ACTGCAGCAGATTTTAAACCCGAAAGAAGATGACAAACGGGAACTGGAGTTCGGCGAGGTTATCTACCGTGACGGTGATA
AAGTACTGCAGCTGGTCAACCGGCCGGAAGACAATGTCTTTAATGGTGATATCGGCGAAGTAGTGGGGATTTTTATGGCG
GCAGAAAATGCGCTGAACAAAGATGTGATCATTGTAGACTATGACGGCAACGAAGTGACCTACACGAGGCAGGACCTGAC
TGAGCTGACACACGCATACTGCTGTTCCATCCACAAGGCGCAGGGTTCAGAATTTCCGATTGTGATCATGCCGGTCGTCA
AAGCCTATTACCGCATGCTGCAGAAAAATATCCTTTATACAGGACTGACGCGTGCGAAACAATCCCTTATTCTTTGCGGG
GAACGGCAGGCTTTTGATGACGGGATAAAGCGCATGGGTCTCGAACGCATGACCTCCTTCGCTCAGCATTTGTGTGATTA
CTTCGGCGGTGAGGAGGAGACCGCCGATATACCGGTCGGTGAACTGACAGAAGAGAATATGCATCTGATTTCACCGATGA
TCAATATGGACGGGATTTCTCCTTATGACTATGAAACAGTTGACGCGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

AAA domain (AAA_30)

(338-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.525

100

0.527