Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   OXB_RS15255 Genome accession   NZ_AP013294
Coordinates   3050943..3053354 (-) Length   803 a.a.
NCBI ID   WP_041075300.1    Uniprot ID   -
Organism   Bacillus sp. OxB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3045943..3058354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXB_RS15235 (OXB_3055) - 3046925..3047212 (-) 288 WP_041075296.1 DUF1292 domain-containing protein -
  OXB_RS15240 (OXB_3056) ruvX 3047226..3047642 (-) 417 WP_041075297.1 Holliday junction resolvase RuvX -
  OXB_RS15245 (OXB_3057) - 3047639..3047911 (-) 273 WP_041075298.1 IreB family regulatory phosphoprotein -
  OXB_RS15250 (OXB_3058) alaS 3047972..3050605 (-) 2634 WP_041075299.1 alanine--tRNA ligase -
  OXB_RS15255 (OXB_3059) recD2 3050943..3053354 (-) 2412 WP_041075300.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OXB_RS15260 (OXB_3060) - 3053374..3054033 (-) 660 WP_041075301.1 tetratricopeptide repeat protein -
  OXB_RS15265 (OXB_3061) mnmA 3054046..3055167 (-) 1122 WP_041075302.1 tRNA 2-thiouridine(34) synthase MnmA -
  OXB_RS15270 (OXB_3062) - 3055190..3056332 (-) 1143 WP_041075303.1 cysteine desulfurase family protein -
  OXB_RS15275 (OXB_3063) - 3056348..3056767 (-) 420 WP_041075304.1 Rrf2 family transcriptional regulator -
  OXB_RS15280 (OXB_3064) - 3056900..3058180 (+) 1281 WP_041076962.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 803 a.a.        Molecular weight: 89766.08 Da        Isoelectric Point: 4.8061

>NTDB_id=65602 OXB_RS15255 WP_041075300.1 3050943..3053354(-) (recD2) [Bacillus sp. OxB-1]
MSGETEEIFLRGRPVVTIFHNPDNLFTILKLKVRETNSGYSEKEIIVKGNFPQLNEDEEYRFTGGLVTHPSYGLQFDVRT
FEKEMPSTETGLIHYLSGDLFPGIGLKTADAIVKKLGKDAIKKIMNDPTVLDTIPRLSDERKETLVTVLQQNMGMERTII
QLNEWGFGPQISMRIYQTYREESIELLNENPYRLIEEVEGVGFQRADELGKNLGITGAHPSRVKAAILHSMNQSVQAAGH
VYLEAKEVLPDVKRILEMSQPIDIPFKTISQAIIELVEESKLSAEGRKLYIPSLYFSELGIASKVARLMENEVADQFPAS
EIRKAVGEVEERLGVNYAETQVSAIETALHSPVMILTGGPGTGKTTVIRGLVEVYAELHGLSLDPKEYAKKKEPFPIVLA
APTGRAAKRMSESTGLPAMTIHRLLGFTGQEKEEEVEREVEGRLIIIDEMSMVDTWLAHQLLKALPDDVQLLFVGDQDQL
PPVGPGQVLRDLLESGKVPVVELTEIYRQSAGSTIIEMAHMIKRSEWSGDIAAKTSDRSFIKADSERILEVVEQVISNAL
SKGHAIKDIQVLAPMYKGPAGIDGLNKMIQEMVNPPSPDRKEVVFGDAVYRIGDKVLQLVNQPESNVFNGDMGEVIAIIK
AKETIDKKELLVVSYDGIEVTYERSDLNQITLAYCCSIHKSQGSEFPIVIMPVVRSHRKMLRRNLLYTGITRAKNFLILC
GEPEEFKMGIFRTDEMQRQTTLKERLNGDSVIEMETEQQAAEPKAEEADMSEPKEYKLTAENFISIDPMIGMQGITPFAF
LEE

Nucleotide


Download         Length: 2412 bp        

>NTDB_id=65602 OXB_RS15255 WP_041075300.1 3050943..3053354(-) (recD2) [Bacillus sp. OxB-1]
ATGAGCGGTGAGACGGAGGAAATCTTCTTGAGGGGGCGCCCGGTCGTCACCATCTTCCATAATCCCGATAACCTTTTCAC
GATTCTGAAACTGAAAGTCCGTGAAACAAATTCCGGTTATTCAGAGAAAGAGATCATCGTGAAGGGAAACTTCCCACAAT
TGAATGAAGATGAAGAATACCGTTTCACAGGCGGGCTCGTCACCCATCCGTCCTACGGCTTGCAATTTGACGTCCGGACC
TTCGAGAAGGAGATGCCGTCCACCGAGACCGGGCTGATCCATTATTTGTCTGGCGACCTTTTTCCGGGCATCGGATTGAA
GACGGCGGATGCGATCGTAAAGAAACTGGGCAAAGATGCCATCAAGAAAATTATGAACGATCCGACTGTCCTCGACACGA
TTCCTCGTCTATCGGACGAGCGGAAAGAGACGTTGGTGACAGTATTGCAACAGAATATGGGGATGGAACGGACGATCATT
CAGTTGAATGAATGGGGTTTCGGACCCCAGATCAGCATGCGGATCTATCAGACATACCGGGAAGAGTCCATCGAATTGTT
AAATGAAAATCCATATCGCCTGATCGAGGAAGTTGAAGGCGTCGGTTTCCAACGGGCGGATGAGCTCGGAAAAAATCTCG
GAATTACAGGTGCCCATCCTTCCAGGGTCAAAGCGGCGATCCTCCATTCAATGAACCAATCAGTGCAAGCGGCGGGCCAT
GTCTATTTGGAGGCGAAAGAGGTTTTACCCGACGTCAAACGCATCTTGGAAATGAGCCAGCCGATCGATATCCCGTTCAA
AACGATCTCACAAGCGATCATCGAGCTTGTAGAGGAGAGCAAATTGTCAGCGGAAGGCAGGAAATTGTATATTCCCTCCC
TTTACTTTTCCGAGCTTGGCATCGCGTCGAAAGTGGCGCGTCTCATGGAAAATGAAGTGGCGGACCAATTTCCGGCTTCC
GAGATCAGGAAAGCTGTCGGAGAAGTCGAAGAACGTCTCGGGGTCAATTATGCAGAAACGCAAGTGTCTGCGATTGAGAC
GGCTCTTCATTCTCCCGTGATGATCTTGACGGGCGGACCGGGGACCGGGAAGACGACGGTCATCCGAGGTCTTGTCGAAG
TGTACGCGGAACTGCACGGGCTTTCATTGGACCCGAAAGAGTATGCGAAAAAGAAGGAGCCCTTCCCGATCGTGCTGGCG
GCTCCGACTGGACGGGCGGCGAAACGGATGTCCGAATCGACCGGTCTGCCTGCCATGACGATCCACCGGCTGCTCGGTTT
CACCGGGCAGGAGAAGGAAGAAGAAGTGGAGCGGGAGGTGGAAGGCCGCCTGATCATCATCGATGAAATGTCGATGGTCG
ATACGTGGCTGGCCCACCAACTGTTGAAGGCGTTGCCGGATGATGTCCAATTGCTGTTTGTCGGGGACCAAGATCAATTG
CCGCCCGTAGGCCCGGGTCAAGTGCTCCGGGATTTGTTGGAGTCCGGCAAAGTCCCTGTCGTGGAATTGACGGAAATCTA
TCGGCAAAGCGCCGGGTCGACAATTATCGAAATGGCTCATATGATCAAACGTTCCGAATGGTCCGGGGATATTGCTGCGA
AGACCTCCGATCGTTCGTTCATCAAAGCGGATAGCGAACGGATTTTGGAAGTCGTCGAGCAGGTCATTTCCAACGCCCTA
TCGAAAGGGCATGCGATCAAGGATATCCAAGTCCTAGCCCCGATGTACAAAGGACCCGCCGGCATCGACGGCTTGAATAA
AATGATCCAGGAAATGGTCAATCCGCCCTCTCCCGACCGGAAAGAGGTCGTGTTTGGAGACGCGGTCTACCGGATCGGAG
ACAAGGTCCTCCAACTGGTCAACCAGCCGGAGAGCAATGTGTTCAATGGCGATATGGGCGAAGTGATCGCCATCATCAAA
GCGAAAGAAACGATCGATAAAAAAGAGCTGCTCGTCGTTTCCTATGATGGAATCGAAGTGACGTACGAGCGTAGCGACCT
GAATCAGATCACCCTCGCCTACTGCTGTTCCATCCATAAATCGCAAGGCAGCGAATTTCCGATCGTCATTATGCCGGTCG
TCCGCAGCCATCGTAAAATGCTTCGCAGGAACCTGTTATATACAGGCATCACCCGTGCCAAGAATTTCTTGATCCTTTGC
GGGGAGCCTGAAGAATTCAAGATGGGAATCTTCCGTACAGATGAAATGCAGCGGCAAACGACCCTCAAGGAAAGGCTGAA
TGGGGATTCGGTTATCGAAATGGAGACCGAGCAGCAGGCTGCGGAGCCGAAAGCCGAAGAAGCGGATATGTCAGAACCGA
AGGAATATAAGCTTACTGCTGAAAATTTCATCTCCATCGACCCGATGATCGGCATGCAAGGCATCACGCCTTTTGCTTTC
TTGGAAGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(337-543)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-242)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.367

99.875

0.533

Multiple sequence alignment