Detailed information NTG0065593

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: OXB_RS10350
• Genome accession: NZ_AP013294
• Coordinates: 2118482..2119258 (+)
• Length: 258 a.a.
• NCBI ID: WP_041074043.1
• Uniprot ID: A0A0A8JIC2
• Organism: Bacillus sp. OxB-1
• Function: repression of comK (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	2119441..2120901	2118482..2119258	flank	183

Gene organization within MGE regions

Location: 2118482..2120901

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OXB_RS10350 (OXB_2037)	codY	2118482..2119258 (+)	777	WP_041074043.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
OXB_RS10355 (OXB_2038)	-	2119441..2120901 (-)	1461	WP_041074045.1	IS1182 family transposase	-

Sequence

Protein

• Length: 258 a.a.
• Molecular weight: 29106.32 Da
• Isoelectric Point: 4.8377

>NTDB_id=65593 OXB_RS10350 WP_041074043.1 2118482..2119258(+) (codY) [Bacillus sp. OxB-1]
MTLLAKTREINAMLQESAGNPVNFKEMAEELSKVIECNAFIVSRRGKLLGLQIHQQIENERMKKMFQERQFPEEYTNGLF
EVRETSPNLDVYSQHSVFPNENRDLFKEGLTTIVPIIGGGERLGTLILARLQEEFTEDDLILAEYGATVVGMEILREKTE
QIEIEARSKAVVQMAINSLSYSEHEAIEHIFNELDGSEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNSKFLEELEKQKS

Nucleotide

• Length: 777 bp

>NTDB_id=65593 OXB_RS10350 WP_041074043.1 2118482..2119258(+) (codY) [Bacillus sp. OxB-1]
ATGACTTTATTAGCAAAAACACGTGAAATCAATGCCATGTTGCAAGAGTCTGCAGGGAATCCGGTCAATTTTAAAGAAAT
GGCGGAAGAATTGAGCAAAGTGATCGAGTGCAACGCATTCATCGTGAGCCGCAGAGGTAAATTGTTGGGACTTCAAATTC
ATCAGCAAATCGAGAACGAACGCATGAAGAAAATGTTCCAAGAACGCCAGTTCCCGGAAGAGTATACGAACGGCCTTTTT
GAAGTGCGGGAAACATCACCGAACCTTGATGTCTATAGCCAGCATAGCGTGTTCCCGAATGAAAACCGCGACCTATTCAA
AGAAGGGCTCACGACCATCGTTCCAATCATCGGTGGAGGAGAACGCCTTGGTACGCTCATTTTGGCAAGACTGCAAGAAG
AATTTACAGAGGACGACCTGATCCTTGCGGAGTACGGCGCCACAGTCGTCGGGATGGAAATCCTTAGAGAAAAAACGGAG
CAAATCGAAATCGAGGCACGGAGCAAAGCGGTCGTTCAAATGGCAATCAATTCACTATCCTATAGTGAGCATGAAGCGAT
TGAGCATATTTTCAATGAATTGGACGGAAGCGAAGGTTTGCTCGTCGCATCCAAAATTGCGGATCGCGTTGGGATTACAA
GATCGGTTATCGTCAATGCGTTGCGTAAACTGGAAAGTGCCGGCGTTATCGAATCCCGTTCGCTCGGTATGAAAGGTACT
TATATTAAAGTATTGAACAGTAAATTCCTTGAAGAATTGGAAAAGCAAAAATCATAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (2-178)

3D structure

• AlphaFold DB: A0A0A8JIC2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	80.233	100	0.802
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.837	0.473