Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LGL65_RS01620 Genome accession   NZ_CP092110
Coordinates   311337..312116 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain LOH112     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 306337..317116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL65_RS01590 fliH 306381..307136 (-) 756 WP_017417778.1 flagellar assembly protein FliH -
  LGL65_RS01595 fliG 307129..308145 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  LGL65_RS01600 fliF 308158..309768 (-) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  LGL65_RS01605 fliE 309811..310131 (-) 321 WP_025649464.1 flagellar hook-basal body complex protein FliE -
  LGL65_RS01610 flgC 310142..310594 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  LGL65_RS01615 flgB 310594..310983 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  LGL65_RS01620 codY 311337..312116 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LGL65_RS01625 hslU 312154..313566 (-) 1413 WP_257986734.1 HslU--HslV peptidase ATPase subunit -
  LGL65_RS01630 hslV 313574..314119 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  LGL65_RS01635 xerC 314135..315052 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  LGL65_RS01640 trmFO 315122..316429 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=655928 LGL65_RS01620 WP_003154263.1 311337..312116(-) (codY) [Bacillus velezensis strain LOH112]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=655928 LGL65_RS01620 WP_003154263.1 311337..312116(-) (codY) [Bacillus velezensis strain LOH112]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471