Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG427_RS26380 Genome accession   NZ_CP108183
Coordinates   5836092..5837825 (-) Length   577 a.a.
NCBI ID   WP_405811301.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00133     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5831092..5842825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG427_RS26370 (OG427_26325) - 5832672..5833925 (+) 1254 WP_405808396.1 sigma-70 family RNA polymerase sigma factor -
  OG427_RS26375 (OG427_26330) rcrQ 5834173..5836095 (-) 1923 WP_405808397.1 ABC transporter ATP-binding protein Regulator
  OG427_RS26380 (OG427_26335) rcrP 5836092..5837825 (-) 1734 WP_405811301.1 ABC transporter ATP-binding protein Regulator
  OG427_RS26385 (OG427_26340) - 5837929..5839374 (-) 1446 WP_360879721.1 FGGY family carbohydrate kinase -
  OG427_RS26390 (OG427_26345) - 5839410..5839709 (-) 300 WP_360879718.1 YtxH domain-containing protein -
  OG427_RS26410 (OG427_26365) - 5840850..5841128 (+) 279 WP_405808398.1 hypothetical protein -
  OG427_RS26415 (OG427_26370) cas5e 5841125..5841527 (+) 403 Protein_5211 type I-E CRISPR-associated protein Cas5/CasD -
  OG427_RS26420 (OG427_26375) - 5842044..5842226 (-) 183 WP_360879662.1 hypothetical protein -
  OG427_RS26425 (OG427_26380) - 5842473..5842625 (-) 153 WP_360879659.1 hydrophobic protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62651.89 Da        Isoelectric Point: 5.5991

>NTDB_id=655734 OG427_RS26380 WP_405811301.1 5836092..5837825(-) (rcrP) [Streptomyces sp. NBC_00133]
MLIRLLRTHLSPYRQPIALLVVLQLLQTSATLYLPTLNANIIDNGVVEGDTGYILRVGALMIAVSIVQVLCNMGAVFYGA
RTAAALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKKMRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDEYEKERFRGSNTELTDVSLSTGRLMAL
MFPTVMTVVNVSSIAVIWFGAMRVDSGAIQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTDSSVVT
PAEPVRQLRRRGHLEVRDVEFRYPGAEESVLRSVGLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTGGEVLVDGVDVR
ELDPVLMAKTVGLVPQKPYLFSGTVATNLRYGKPGASDEELWEALEVAQAADFVRELEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALAREITESTVVIVAQRVSTIRDADRIVVLDEGQVVGSGRHHELMESN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=655734 OG427_RS26380 WP_405811301.1 5836092..5837825(-) (rcrP) [Streptomyces sp. NBC_00133]
GTGCTGATACGACTACTACGGACTCACCTGAGTCCGTACAGACAACCCATCGCCCTGCTGGTGGTGCTCCAGCTCCTGCA
GACCAGCGCCACCCTCTATCTGCCCACCCTCAACGCGAACATCATTGACAACGGTGTTGTCGAGGGGGACACCGGCTACA
TCCTCCGGGTCGGCGCTCTCATGATCGCCGTCAGCATCGTCCAGGTGCTCTGCAACATGGGAGCGGTCTTCTACGGAGCG
CGGACGGCCGCCGCGCTCGGCCGCGATGTCCGGGCCGCCGTCTTCGACCGGGTGCAGAGCTTCTCCGCCCGGGAGGTCGG
CCACTTCGGGGCGCCGTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTGCAGATGCTGGCCCTGATGGCGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGATGTGCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTGGGCATCGCGGTGTCGCTGATCGTCAAGAAGATGCGGCCCCTGTTCCGCACCATGCA
GGTACGTCTGGACACGGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGCGTCATCCGTGCCTTCGTCCGTGACG
AGTACGAGAAGGAGCGCTTCCGCGGGTCCAACACCGAGCTGACCGATGTGTCCCTGTCCACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCCATCGCGGTCATCTGGTTCGGTGCCATGCGGGTCGACAGCGG
CGCGATCCAGATCGGCGCGCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGGATCGAGGAGGTGCTGGGCACGGATTCGAGCGTGGTGACG
CCGGCCGAGCCGGTGCGGCAGCTGCGCCGTCGCGGGCATCTGGAGGTGCGGGACGTGGAGTTCCGCTATCCGGGTGCGGA
GGAGTCGGTGCTGCGCAGCGTCGGCCTGGTGGCCAGGCCCGGCGAGACGACCGCGATCATCGGGTCCACGGGCAGCGGAA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGTGACCGGCGGCGAGGTGCTCGTCGACGGCGTCGATGTGCGC
GAGCTCGATCCCGTCCTGATGGCGAAGACGGTGGGGCTCGTTCCGCAGAAGCCGTATCTCTTCTCCGGGACGGTGGCCAC
GAATCTGCGGTACGGCAAGCCCGGCGCGAGCGACGAGGAACTGTGGGAGGCGCTGGAAGTGGCGCAGGCCGCCGACTTCG
TACGGGAGCTGGAAGGCGGGCTGAACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGCCAGCGGCAGCGGCTC
GCGATCGCCAGGACGCTGGTGCAACGCCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCGCTGGACTATGCGACGGA
CGCGGCGCTGCGCGGGGCGCTGGCCCGGGAGATCACCGAGTCCACGGTGGTGATCGTCGCCCAGCGGGTGTCCACCATCC
GTGACGCGGACCGCATCGTGGTCCTGGACGAGGGGCAGGTCGTGGGAAGCGGACGCCATCACGAGCTGATGGAGAGCAAT
GAGACCTACCGAGAGATCGTGCTCTCGCAGCTGACGGAGGCTGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(353-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.426

97.747

0.395