Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG565_RS24200 Genome accession   NZ_CP108177
Coordinates   5667319..5669055 (-) Length   578 a.a.
NCBI ID   WP_328913410.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00138     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5662319..5674055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG565_RS24190 (OG565_24230) - 5663374..5665191 (-) 1818 WP_328913411.1 phosphatidylglycerol lysyltransferase domain-containing protein -
  OG565_RS24195 (OG565_24235) rcrQ 5665343..5667271 (-) 1929 WP_328917795.1 ABC transporter ATP-binding protein Regulator
  OG565_RS24200 (OG565_24240) rcrP 5667319..5669055 (-) 1737 WP_328913410.1 ABC transporter ATP-binding protein Regulator
  OG565_RS24205 (OG565_24245) - 5669678..5671123 (-) 1446 WP_328913409.1 FGGY family carbohydrate kinase -
  OG565_RS24210 (OG565_24250) - 5671214..5671510 (-) 297 WP_328913408.1 YtxH domain-containing protein -
  OG565_RS24230 (OG565_24270) - 5672157..5672561 (-) 405 Protein_4769 sugar nucleotide-binding protein -
  OG565_RS24235 (OG565_24275) - 5672749..5673423 (-) 675 Protein_4770 UDP binding domain-containing protein -
  OG565_RS24240 (OG565_24280) - 5673391..5673714 (+) 324 Protein_4771 transcriptional regulator -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62174.37 Da        Isoelectric Point: 6.6132

>NTDB_id=655585 OG565_RS24200 WP_328913410.1 5667319..5669055(-) (rcrP) [Streptomyces sp. NBC_00138]
MLIRLLRSHIGPYKRPIGLLVLLQLVATIAALYLPTLNADIIDNGVVKGDTGYIMTLGGVMIAVTVAQVCCSIGGVFFGA
RTAMAVGRDIRKSVFDRVQSFSSREVGQFGAPSLITRTTNDVQQVQMLVLMSFTLMVSAPIMCVGGIAMALGQDVPLSSL
LLAVVPALGIAVSLIIRRMRPLFRTMQRRVDTVNRVLREQITGIRVIRAFVKDDYEQRRFDRANEDVTAVSLATGRLMAL
MFPVVMAVVNISSVAVLWFGAHRIDSGGMQIGALTAFLSYLMQILMSVMMATFMFMMVPRAEVCAERIQEVLGTDSSVVP
PSAPVTDLRRHGHLELAGVEFAYPGAEAAVLRGIDLVARPGQTTAVIGSTGSGKSTLLGLIPRLYDATGGRVLVDGEDVA
HIDPALLAETVGLVPQKPYLFSGTVATNLRYGKPDASDEELWHALEVAQAKDFVEGLEGGLDAPIAQGGSNVSGGQRQRL
AIARCLVRRPEIYLFDDSFSALDYATDAALRRALASETAQATVVIVAQRVSTIRDADRIVVLDEGRVVGTGTHTELMAGN
ETYREIVLSQLTEQEAAA

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=655585 OG565_RS24200 WP_328913410.1 5667319..5669055(-) (rcrP) [Streptomyces sp. NBC_00138]
GTGCTGATCCGACTCCTCCGGTCCCATATCGGACCGTACAAGCGCCCCATCGGGCTGCTGGTACTGCTCCAGCTGGTGGC
GACCATCGCCGCCCTCTATCTGCCCACCCTGAACGCGGACATCATCGACAACGGCGTGGTCAAGGGGGACACCGGCTACA
TCATGACCCTGGGCGGCGTCATGATCGCGGTGACCGTCGCCCAGGTGTGCTGCTCGATCGGCGGGGTCTTCTTCGGGGCC
AGGACCGCCATGGCCGTCGGCCGGGACATCCGCAAGTCCGTCTTCGACCGGGTGCAGAGCTTCTCGTCCCGCGAGGTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGTACCACCAACGACGTCCAGCAGGTGCAGATGCTGGTGCTGATGTCGTTCA
CCCTGATGGTGTCCGCGCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCGGCCAGGACGTGCCGCTGTCCTCGCTG
CTGCTGGCGGTCGTCCCGGCGCTGGGCATCGCGGTGAGCCTGATCATCCGCAGGATGCGCCCGCTGTTCCGTACGATGCA
GCGCCGCGTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCATCCGCGTCATCCGGGCCTTCGTCAAGGACG
ACTACGAGCAGCGGCGCTTCGACCGGGCCAACGAGGACGTGACCGCGGTCTCCCTGGCCACCGGCCGGCTGATGGCCCTG
ATGTTCCCGGTCGTGATGGCCGTGGTGAACATCTCCAGCGTCGCCGTGCTGTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTTCTCAGCTATCTGATGCAGATCCTGATGTCGGTCATGATGGCCACGTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGGCACGGACTCCAGCGTCGTACCG
CCCTCCGCGCCCGTGACGGACCTACGCCGGCACGGCCACCTGGAGCTGGCCGGCGTCGAGTTCGCCTACCCGGGCGCCGA
GGCGGCCGTGCTGCGCGGGATCGACCTCGTCGCCCGGCCCGGCCAGACCACCGCGGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTGCTCGGCCTGATCCCCCGGCTGTACGACGCGACCGGCGGCCGGGTGCTGGTCGACGGCGAGGACGTCGCC
CACATCGATCCGGCGCTGCTCGCCGAGACCGTCGGGCTGGTGCCGCAGAAGCCGTATCTGTTCTCCGGGACCGTGGCGAC
CAATCTGCGCTACGGGAAGCCGGACGCGAGCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGGAAGGGCTCGAAGGCGGGCTGGACGCGCCGATCGCCCAGGGCGGCAGCAATGTCTCCGGCGGGCAGCGGCAGCGGCTG
GCGATCGCCCGATGTCTGGTCCGCCGGCCGGAGATCTATCTGTTCGACGACTCCTTCTCGGCGCTGGACTACGCGACGGA
CGCGGCGCTGCGGCGGGCGCTGGCGAGCGAGACCGCGCAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCCACGATCC
GCGACGCCGACCGGATCGTCGTCCTGGACGAGGGCCGGGTCGTCGGCACGGGCACCCACACCGAACTGATGGCCGGGAAC
GAGACCTACCGGGAGATCGTGTTGTCGCAGCTCACGGAGCAGGAGGCCGCGGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.029

95.502

0.401