Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MCS24_RS07245 Genome accession   NZ_CP092050
Coordinates   1694537..1695277 (-) Length   246 a.a.
NCBI ID   WP_005875257.1    Uniprot ID   A0A0E2LU95
Organism   Porphyromonas gingivalis strain W50/BR1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1689537..1700277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCS24_RS07230 (MCS24_07235) - 1690416..1690997 (+) 582 WP_004583806.1 RNA polymerase sigma factor -
  MCS24_RS10230 - 1691101..1691235 (+) 135 WP_005875263.1 hypothetical protein -
  MCS24_RS07235 (MCS24_07240) - 1691417..1692319 (+) 903 WP_005875328.1 hypothetical protein -
  MCS24_RS07240 (MCS24_07245) - 1692338..1694407 (+) 2070 WP_005875347.1 M13 family metallopeptidase -
  MCS24_RS07245 (MCS24_07250) comF 1694537..1695277 (-) 741 WP_005875257.1 ComF family protein Machinery gene
  MCS24_RS07250 (MCS24_07255) - 1695261..1695746 (-) 486 WP_004583801.1 regulatory protein RecX -
  MCS24_RS07255 (MCS24_07260) prmC 1695743..1696624 (-) 882 WP_005875312.1 peptide chain release factor N(5)-glutamine methyltransferase -
  MCS24_RS07260 (MCS24_07265) ribD 1696649..1697640 (+) 992 Protein_1439 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  MCS24_RS10440 - 1697724..1697885 (+) 162 WP_369522884.1 DUF1661 domain-containing protein -
  MCS24_RS07265 (MCS24_07270) aspS 1698071..1699834 (+) 1764 WP_005875297.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27475.95 Da        Isoelectric Point: 10.0451

>NTDB_id=655402 MCS24_RS07245 WP_005875257.1 1694537..1695277(-) (comF) [Porphyromonas gingivalis strain W50/BR1]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=655402 MCS24_RS07245 WP_005875257.1 1694537..1695277(-) (comF) [Porphyromonas gingivalis strain W50/BR1]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCACGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAAGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGGGCTACGGTACAAGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTATTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2LU95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

100

100

1