Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ANG_RS07665 Genome accession   NZ_AP013072
Coordinates   1508246..1509091 (-) Length   281 a.a.
NCBI ID   WP_020999531.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. whileyi MAS624     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1503246..1514091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANG_RS07655 (ANG_1554) - 1504439..1506208 (-) 1770 WP_025271876.1 ABC transporter ATP-binding protein -
  ANG_RS07660 (ANG_1555) - 1506218..1507954 (-) 1737 WP_003037228.1 ABC transporter ATP-binding protein -
  ANG_RS07665 (ANG_1556) endA 1508246..1509091 (-) 846 WP_020999531.1 DNA/RNA non-specific endonuclease Machinery gene
  ANG_RS07670 (ANG_1557) - 1509192..1509368 (-) 177 WP_003037331.1 DNA-directed RNA polymerase subunit beta -
  ANG_RS07675 (ANG_1558) murA 1509361..1510641 (-) 1281 WP_025271877.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ANG_RS07680 (ANG_1559) - 1510680..1510910 (-) 231 WP_018543445.1 DUF1146 family protein -
  ANG_RS07685 (ANG_1560) - 1511015..1511434 (-) 420 WP_003069748.1 F0F1 ATP synthase subunit epsilon -
  ANG_RS07690 (ANG_1561) atpD 1511445..1512851 (-) 1407 WP_003030503.1 F0F1 ATP synthase subunit beta -
  ANG_RS07695 (ANG_1562) - 1512886..1513764 (-) 879 WP_003025271.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 30624.28 Da        Isoelectric Point: 10.4147

>NTDB_id=65527 ANG_RS07665 WP_020999531.1 1508246..1509091(-) (endA) [Streptococcus anginosus subsp. whileyi MAS624]
MARKKSNQKVTQSVAGLVIALVLVLGGYSFSNHHSSTKPSDSTAINRSIRTNHAAPSQELAQSVLTESVKRQLKGKIEWN
GAGAFTINENQTTLDAKVASVPYADNKTKLVRGQTVPTVANALLSKATRQYKNREETGNGSTTWTPAGWHQVKHLSGEYN
HAVDRGHLLGYALIGNLKGFDASTSNPKNIAVQTAWANQANTGHSTGQNFYETKVRKALDKNKRVRYRVTLIYANEQDLV
PVGSHIEGKSNDGSLEINVFVPNVQTGLRLNYQTGEVTVTN

Nucleotide


Download         Length: 846 bp        

>NTDB_id=65527 ANG_RS07665 WP_020999531.1 1508246..1509091(-) (endA) [Streptococcus anginosus subsp. whileyi MAS624]
ATGGCGAGAAAGAAATCCAACCAGAAAGTAACACAAAGTGTAGCTGGTCTGGTTATAGCACTGGTTCTTGTGCTAGGAGG
TTATTCTTTTAGCAATCATCATAGTAGTACGAAGCCTTCTGACAGCACTGCTATTAATCGAAGTATTCGGACGAATCATG
CAGCACCCAGTCAAGAATTAGCGCAGAGTGTTTTGACAGAATCCGTCAAGCGGCAGCTTAAAGGAAAGATCGAATGGAAT
GGAGCGGGAGCTTTCACAATCAACGAAAATCAAACAACATTGGATGCCAAAGTCGCAAGCGTTCCTTACGCGGATAATAA
GACCAAGCTCGTCCGGGGTCAGACTGTTCCGACTGTAGCCAATGCTCTTTTATCCAAAGCCACTCGTCAGTATAAGAATC
GTGAGGAGACAGGAAATGGCTCCACGACTTGGACACCTGCTGGTTGGCATCAGGTGAAGCATTTATCAGGTGAATATAAT
CATGCGGTTGACCGTGGGCATTTGTTGGGTTATGCTTTGATTGGCAACTTGAAAGGTTTTGATGCTTCGACCAGCAACCC
GAAAAACATCGCTGTGCAAACAGCTTGGGCTAATCAAGCCAATACTGGTCATTCTACGGGTCAAAATTTTTATGAAACAA
AGGTCCGCAAGGCACTAGACAAAAATAAACGAGTTCGGTATCGGGTGACTTTGATTTATGCCAATGAACAGGATTTGGTG
CCGGTTGGTTCGCATATTGAAGGCAAATCTAATGACGGCAGTCTGGAAATAAATGTCTTTGTTCCCAACGTACAGACAGG
ACTTCGGCTAAATTATCAAACAGGAGAAGTGACTGTTACCAACTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

76.991

80.427

0.619
  endA Streptococcus pneumoniae D39

76.991

80.427

0.619
  endA Streptococcus pneumoniae R6

76.991

80.427

0.619
  endA Streptococcus pneumoniae TIGR4

76.991

80.427

0.619

Multiple sequence alignment