Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   MA853_RS07135 Genome accession   NZ_CP092026
Coordinates   1373479..1373994 (-) Length   171 a.a.
NCBI ID   WP_002810372.1    Uniprot ID   -
Organism   Campylobacter coli strain 14240-1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1368479..1378994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA853_RS07120 (MA853_07120) - 1368580..1370400 (-) 1821 WP_238522826.1 motility associated factor glycosyltransferase family protein -
  MA853_RS07125 (MA853_07125) - 1370397..1372226 (-) 1830 WP_238522827.1 motility associated factor glycosyltransferase family protein -
  MA853_RS07130 (MA853_07130) - 1372238..1373479 (-) 1242 WP_238522828.1 DUF2920 family protein -
  MA853_RS07135 (MA853_07135) ctsG 1373479..1373994 (-) 516 WP_002810372.1 type II secretion system protein Machinery gene
  MA853_RS07140 (MA853_07140) tsaD 1373995..1375002 (-) 1008 WP_002810375.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  MA853_RS07145 (MA853_07145) - 1374999..1376393 (-) 1395 WP_002810378.1 M99 family carboxypeptidase catalytic domain-containing protein -
  MA853_RS07150 (MA853_07150) dxr 1376395..1377465 (-) 1071 WP_002783930.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  MA853_RS07155 (MA853_07155) - 1377462..1378187 (-) 726 WP_002806265.1 phosphatidate cytidylyltransferase -
  MA853_RS07160 (MA853_07160) - 1378196..1378534 (-) 339 WP_002806264.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18764.60 Da        Isoelectric Point: 6.4693

>NTDB_id=655208 MA853_RS07135 WP_002810372.1 1373479..1373994(-) (ctsG) [Campylobacter coli strain 14240-1]
MRKAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=655208 MA853_RS07135 WP_002810372.1 1373479..1373994(-) (ctsG) [Campylobacter coli strain 14240-1]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93