Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   MA852_RS07050 Genome accession   NZ_CP092025
Coordinates   1346462..1346977 (-) Length   171 a.a.
NCBI ID   WP_238505019.1    Uniprot ID   -
Organism   Campylobacter coli strain 14158-6     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1341462..1351977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA852_RS07035 (MA852_07035) - 1341565..1343382 (-) 1818 WP_238505015.1 motility associated factor glycosyltransferase family protein -
  MA852_RS07040 (MA852_07040) - 1343379..1345202 (-) 1824 WP_238505017.1 motility associated factor glycosyltransferase family protein -
  MA852_RS07045 (MA852_07045) - 1345212..1346462 (-) 1251 WP_238505018.1 DUF2920 family protein -
  MA852_RS07050 (MA852_07050) ctsG 1346462..1346977 (-) 516 WP_238505019.1 type II secretion system protein Machinery gene
  MA852_RS07055 (MA852_07055) tsaD 1346978..1347985 (-) 1008 WP_238505021.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  MA852_RS07060 (MA852_07060) - 1347982..1349376 (-) 1395 WP_002777754.1 M99 family carboxypeptidase catalytic domain-containing protein -
  MA852_RS07065 (MA852_07065) dxr 1349373..1350449 (-) 1077 WP_057044859.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  MA852_RS07070 (MA852_07070) - 1350446..1351171 (-) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  MA852_RS07075 (MA852_07075) - 1351180..1351518 (-) 339 WP_057044860.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18692.59 Da        Isoelectric Point: 6.4693

>NTDB_id=655183 MA852_RS07050 WP_238505019.1 1346462..1346977(-) (ctsG) [Campylobacter coli strain 14158-6]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=655183 MA852_RS07050 WP_238505019.1 1346462..1346977(-) (ctsG) [Campylobacter coli strain 14158-6]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCAATCGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936