Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG553_RS23000 Genome accession   NZ_CP108161
Coordinates   5006545..5008278 (-) Length   577 a.a.
NCBI ID   WP_405980792.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00158     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5001545..5013278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG553_RS22990 (OG553_22950) - 5003451..5004545 (+) 1095 WP_405980790.1 RNA polymerase sigma factor -
  OG553_RS22995 (OG553_22955) rcrQ 5004626..5006548 (-) 1923 WP_405980791.1 ABC transporter ATP-binding protein Regulator
  OG553_RS23000 (OG553_22960) rcrP 5006545..5008278 (-) 1734 WP_405980792.1 ABC transporter ATP-binding protein Regulator
  OG553_RS23005 (OG553_22965) - 5008400..5009845 (-) 1446 WP_405980793.1 FGGY family carbohydrate kinase -
  OG553_RS23010 (OG553_22970) - 5009886..5010185 (-) 300 WP_405980794.1 YtxH domain-containing protein -
  OG553_RS23030 (OG553_22990) - 5010908..5011090 (-) 183 WP_405980795.1 hypothetical protein -
  OG553_RS23035 (OG553_22995) - 5011388..5012374 (+) 987 WP_405980796.1 LuxR C-terminal-related transcriptional regulator -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62793.86 Da        Isoelectric Point: 5.1764

>NTDB_id=655171 OG553_RS23000 WP_405980792.1 5006545..5008278(-) (rcrP) [Streptomyces sp. NBC_00158]
MLIRLLRTHLDPYKKPIAVLVLLQLLQTSASLYLPTLNADIIDKGVVNGDTGYILRFGALMLGVSLVQLVCNAGAVYYGA
RTAASLGRDVRASVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVKLSSV
LLAVVPVLGVSVGAIVWKTRPLFRLMQDRLDVVNRVLREQITGNRVIRAFVRDGYEEERFRRANSELTEVSLASGKLLAL
MFPVVILVVNISSVAVIWFGAMRVDGGGMEIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PVDPVRTLARRGQLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGDVLVDGEDVR
RIDPELLARTVGMVPQKPYLFSGTVASNLRYGRPDATDEELWRALEVAQAKDFVSELEHGLEAPITQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=655171 OG553_RS23000 WP_405980792.1 5006545..5008278(-) (rcrP) [Streptomyces sp. NBC_00158]
GTGCTCATACGACTGCTGCGGACCCACCTGGATCCGTACAAGAAACCGATCGCCGTACTGGTGCTGCTGCAACTCCTGCA
GACCAGTGCGAGCCTCTACCTGCCCACCCTCAACGCGGACATCATCGACAAGGGCGTCGTCAACGGGGACACCGGCTACA
TCCTGCGCTTCGGCGCGCTGATGCTCGGGGTCTCCCTCGTCCAGCTCGTCTGCAACGCCGGGGCCGTCTACTACGGTGCC
CGCACCGCGGCCTCCCTCGGCCGTGACGTCCGCGCCTCCGTCTTCGACCGGGTGCAGAGCTTCTCGGCGCGGGAGCTGGG
CCAGTTCGGCGCCCCGTCGCTGATCACCCGTACGACGAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACGTTCA
CCCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCGCTGGACGTGAAGCTGTCGTCCGTC
CTGCTCGCGGTGGTGCCCGTCCTCGGCGTCTCGGTCGGCGCGATCGTCTGGAAGACCCGGCCGCTGTTCCGCCTGATGCA
GGACCGTCTCGACGTCGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGCGACG
GCTACGAGGAGGAGCGCTTCCGCCGGGCGAACTCCGAGCTGACCGAGGTGTCGCTGGCCTCCGGCAAGCTGCTCGCCCTG
ATGTTCCCGGTCGTCATCCTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGTGCGATGCGGGTGGACGGCGG
CGGCATGGAGATCGGCCAGCTGACCGCGTTCCTCGCCTACCTGATGCAGATCGTCATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTCGACACCGAGTCCAGCGTGGTCCCG
CCCGTCGACCCGGTGCGTACGCTGGCCCGGCGCGGGCAGCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCCCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGTCCCGGCGAGACCACCGCGGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACACTGCTGGGCCTGGTGCCCCGGCTGTTCGACGCGACCGGCGGCGACGTGCTGGTCGACGGGGAGGACGTACGC
CGGATCGACCCGGAGCTGCTGGCCCGGACGGTCGGCATGGTCCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCCTC
CAACCTGCGCTACGGACGCCCGGACGCGACCGACGAGGAACTGTGGCGGGCCCTGGAGGTCGCCCAGGCCAAGGACTTCG
TGTCCGAGCTGGAGCACGGCCTGGAGGCGCCGATCACCCAGGGCGGGACGAACGTCTCGGGCGGCCAGCGCCAGCGTCTG
GCGATCGCCCGCACGCTGGTGCAGCGGCCGGAGATCTACCTGTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGGGAGACCGAGGACGCGACGGTCGTCATCGTCGCGCAGCGGGTCTCCACGATCC
GTGACGCCGACCGGATCATCGTCCTCGACGAGGGCCAGGTGGTGGGCGAGGGCCGTCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.863

100

0.402