Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   MA849_RS05485 Genome accession   NZ_CP092020
Coordinates   1072058..1072789 (+) Length   243 a.a.
NCBI ID   WP_052801667.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 14991B     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1067058..1077789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA849_RS05455 (MA849_05455) rpsF 1067201..1067578 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  MA849_RS05460 (MA849_05460) ssb 1067587..1068138 (+) 552 WP_002921394.1 single-stranded DNA-binding protein -
  MA849_RS05465 (MA849_05465) rpsR 1068149..1068409 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  MA849_RS05470 (MA849_05470) lon 1068469..1070844 (-) 2376 WP_052779714.1 endopeptidase La -
  MA849_RS05475 (MA849_05475) - 1070861..1071508 (-) 648 WP_002936691.1 outer membrane protein assembly factor BamD -
  MA849_RS05480 (MA849_05480) fliW 1071669..1072058 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  MA849_RS05485 (MA849_05485) proC 1072058..1072789 (+) 732 WP_052801667.1 pyrroline-5-carboxylate reductase Machinery gene
  MA849_RS05490 (MA849_05490) ctsT 1072786..1073088 (+) 303 WP_002936694.1 type II secretion system protein Machinery gene
  MA849_RS05495 (MA849_05495) - 1073085..1073747 (+) 663 WP_002936695.1 hypothetical protein -
  MA849_RS05500 (MA849_05500) - 1073744..1074196 (+) 453 WP_052817076.1 hypothetical protein -
  MA849_RS05505 (MA849_05505) hemD 1074193..1074822 (-) 630 WP_058000706.1 uroporphyrinogen-III synthase -
  MA849_RS05510 (MA849_05510) thiE 1074800..1075432 (-) 633 WP_052779711.1 thiamine phosphate synthase -
  MA849_RS05515 (MA849_05515) thiD 1075422..1076234 (-) 813 WP_052779729.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MA849_RS05520 (MA849_05520) - 1076231..1076917 (-) 687 WP_058000707.1 endonuclease III domain-containing protein -
  MA849_RS05525 (MA849_05525) - 1076914..1077675 (-) 762 WP_058000708.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26612.06 Da        Isoelectric Point: 8.9106

>NTDB_id=655129 MA849_RS05485 WP_052801667.1 1072058..1072789(+) (proC) [Campylobacter jejuni subsp. jejuni strain 14991B]
MLYILANGAMATALAYGLKDSYEICIVGRSLEKLQTLAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIMPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEMQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
STK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=655129 MA849_RS05485 WP_052801667.1 1072058..1072789(+) (proC) [Campylobacter jejuni subsp. jejuni strain 14991B]
ATGCTCTATATACTTGCAAATGGAGCTATGGCAACAGCCTTAGCCTATGGATTAAAAGATAGTTATGAAATTTGCATAGT
AGGAAGAAGCTTAGAAAAGCTTCAAACTCTTGCCAAGGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAGG
GCAAAGATGTTATTTTGGCTTTCAAACCTTATGCTTTAGAAAATATTGCCCAAATGCTAAAAGGACAAGCACGCATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATGCCTAATAC
AGCAGCTAAATATAAGGCTTCAACTACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGTTCAGCTTATAAATTAGACAATGAAATGCAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGTATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTTAATCTTAC
ACGCTCTTTATTTAAAAGCTCTAGCGCTTTGCTAGAACATGAACATCCAGCCATTATTAAAGAAAATATTTGCTCTCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCACTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

97.531

100

0.975