Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   MA848_RS06685 Genome accession   NZ_CP092018
Coordinates   1325630..1326145 (-) Length   171 a.a.
NCBI ID   WP_238507342.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 15363C     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1320630..1331145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA848_RS06670 (MA848_06670) - 1320742..1322559 (-) 1818 WP_238507338.1 motility associated factor glycosyltransferase family protein -
  MA848_RS06675 (MA848_06675) - 1322556..1324379 (-) 1824 WP_069176595.1 motility associated factor glycosyltransferase family protein -
  MA848_RS06680 (MA848_06680) - 1324389..1325630 (-) 1242 WP_238507340.1 DUF2920 family protein -
  MA848_RS06685 (MA848_06685) ctsG 1325630..1326145 (-) 516 WP_238507342.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MA848_RS06690 (MA848_06690) tsaD 1326146..1327153 (-) 1008 WP_238513226.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  MA848_RS06695 (MA848_06695) - 1327150..1328544 (-) 1395 WP_052814049.1 M99 family carboxypeptidase catalytic domain-containing protein -
  MA848_RS06700 (MA848_06700) dxr 1328546..1329616 (-) 1071 WP_002873627.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  MA848_RS06705 (MA848_06705) cdsA 1329613..1330338 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  MA848_RS06710 (MA848_06710) - 1330347..1330685 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18562.44 Da        Isoelectric Point: 6.4665

>NTDB_id=655109 MA848_RS06685 WP_238507342.1 1325630..1326145(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain 15363C]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVIGVENVDLGN
FNGTKEVNFGVGNDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=655109 MA848_RS06685 WP_238507342.1 1325630..1326145(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain 15363C]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAATCGGGGTTGAAAATGTTGATCTTGGCAAT
TTTAACGGCACAAAAGAAGTAAATTTTGGCGTAGGCAATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGCAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.924