Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   L3V77_RS00675 Genome accession   NZ_CP091975
Coordinates   143816..144517 (-) Length   233 a.a.
NCBI ID   WP_275135313.1    Uniprot ID   -
Organism   Vibrio sp. DW001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 138816..149517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V77_RS00645 (L3V77_00645) gspL 139034..140245 (+) 1212 WP_275135308.1 type II secretion system protein GspL -
  L3V77_RS00650 (L3V77_00650) - 140245..140739 (+) 495 WP_275135309.1 type II secretion system protein M -
  L3V77_RS00655 (L3V77_00655) - 140741..141502 (+) 762 WP_275135310.1 type II secretion system protein N -
  L3V77_RS00660 (L3V77_00660) nudE 141592..142164 (+) 573 WP_275135311.1 ADP compounds hydrolase NudE -
  L3V77_RS00665 (L3V77_00665) cysQ 142173..143003 (+) 831 WP_275135312.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  L3V77_RS00670 (L3V77_00670) nfuA 143116..143727 (-) 612 WP_275136658.1 Fe-S biogenesis protein NfuA -
  L3V77_RS00675 (L3V77_00675) comF 143816..144517 (-) 702 WP_275135313.1 ComF family protein Machinery gene
  L3V77_RS00680 (L3V77_00680) bioH 144622..145395 (+) 774 WP_275136659.1 pimeloyl-ACP methyl ester esterase BioH -
  L3V77_RS00685 (L3V77_00685) - 145531..146001 (+) 471 WP_275135314.1 ATP-dependent Lon protease -
  L3V77_RS00690 (L3V77_00690) - 146076..148418 (-) 2343 WP_275135315.1 Tex family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26540.03 Da        Isoelectric Point: 9.0246

>NTDB_id=654776 L3V77_RS00675 WP_275135313.1 143816..144517(-) (comF) [Vibrio sp. DW001]
MWKKEIRRIITQYSNPICHLCGLSKDSKSGDLIWCQSCLLLFLAKPRCCQCGLETLIPVAKCGVCLSEPPLWDRLFCVGD
YKAPLSNYIHNLKYSGQLQYAYDLTYLLSKMIDDPAPLIVSMPLHWRRFLHRGYNQSDVLAHYLTAHLQGRSTFGQTLFK
RGKSTPSQQGLDKQQRMKNLTHAFTLNWSPNQTHIAIIDDVVTTGSSVRQLCKLLLDVGVKKIDIYCICRTGT

Nucleotide


Download         Length: 702 bp        

>NTDB_id=654776 L3V77_RS00675 WP_275135313.1 143816..144517(-) (comF) [Vibrio sp. DW001]
ATGTGGAAAAAAGAAATCCGTCGTATTATTACCCAATATTCTAACCCAATTTGCCATTTATGTGGTCTTAGCAAGGACAG
TAAATCTGGCGATCTCATTTGGTGTCAGAGTTGTCTATTGCTTTTTCTAGCCAAACCCCGTTGTTGCCAATGCGGATTAG
AAACCTTAATACCCGTTGCCAAGTGTGGTGTTTGTTTATCCGAACCACCACTCTGGGACCGGCTTTTTTGTGTCGGTGAT
TATAAAGCGCCATTATCTAACTATATCCACAACTTAAAGTATTCAGGTCAACTGCAATACGCCTACGATTTGACCTATTT
GTTATCAAAAATGATAGATGACCCTGCTCCACTCATCGTAAGTATGCCACTTCATTGGCGACGTTTCTTGCATCGAGGTT
ACAACCAGAGTGATGTTCTCGCGCACTACCTTACGGCTCATTTACAAGGTAGGAGTACCTTCGGTCAAACGCTCTTTAAA
AGGGGTAAATCTACCCCTAGCCAACAGGGGTTAGATAAGCAACAAAGGATGAAAAACCTGACCCATGCATTCACCCTCAA
TTGGTCACCGAATCAAACACATATCGCAATTATTGACGACGTAGTTACCACAGGAAGTTCGGTCCGACAATTATGCAAAT
TACTCCTTGATGTTGGAGTAAAAAAAATTGATATTTATTGCATCTGCAGAACAGGAACATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.212

96.996

0.506
  comF Vibrio campbellii strain DS40M4

44.068

100

0.446