Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   L6494_RS15625 Genome accession   NZ_CP091913
Coordinates   3696015..3697124 (+) Length   369 a.a.
NCBI ID   WP_237988631.1    Uniprot ID   -
Organism   Nostoc sp. UHCC 0870     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3691015..3702124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6494_RS15610 (L6494_15605) - 3691822..3692613 (+) 792 WP_237988626.1 GNAT family N-acyltransferase -
  L6494_RS15615 (L6494_15610) - 3692674..3694251 (+) 1578 WP_237988627.1 hypothetical protein -
  L6494_RS15620 (L6494_15615) - 3694452..3695750 (-) 1299 WP_237988629.1 sugar ABC transporter substrate-binding protein -
  L6494_RS15625 (L6494_15620) pilM 3696015..3697124 (+) 1110 WP_237988631.1 type IV pilus biogenesis protein PilM Machinery gene
  L6494_RS15630 (L6494_15625) - 3697129..3697890 (+) 762 WP_237988632.1 PilN domain-containing protein -
  L6494_RS15635 (L6494_15630) - 3697887..3698648 (+) 762 WP_237988634.1 pilus assembly protein PilO -
  L6494_RS15640 (L6494_15635) - 3698876..3701359 (+) 2484 WP_237988635.1 type IV pilus secretin family protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40915.82 Da        Isoelectric Point: 4.4562

>NTDB_id=654650 L6494_RS15625 WP_237988631.1 3696015..3697124(+) (pilM) [Nostoc sp. UHCC 0870]
MVKSFSSLFGKSHKGVGVEIAPERVNVVQIRKQRQGLKIESLTSVPVPEGIVSDGQINDPPAMAQLIQQALAQSKIKTSR
VATGVPGRDSIVRIIPVPAELDDRELRDMVLDHEAGLYLPYPREEADVDYQKLGYFVDEDGIEKVQVLLVATRKEVTDTY
IRTFEQAGLQINVLEINSFALIRTIRDRHLRELSPQEAAVLVDIEFDSTEIAIIVNGIPQFSRTVPVGTYQMQMAWARAM
SLPTSRDMELLYEMKIPLTPIDGDKTGMTEADPGMAGVMRILGELTDELRRSVDFYLNQSENLEVAQIFLAGPGGGLQYL
DDFFTQRLSIPTTQIDPIGSLSLEVNQDDYPATQRSGLGIVLGLGMREV

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=654650 L6494_RS15625 WP_237988631.1 3696015..3697124(+) (pilM) [Nostoc sp. UHCC 0870]
GTGGTGAAAAGTTTTAGTAGTCTGTTTGGTAAATCTCATAAAGGGGTAGGTGTTGAAATAGCACCGGAACGTGTGAATGT
AGTTCAAATACGCAAGCAACGCCAAGGTTTAAAAATCGAATCTTTAACATCAGTACCAGTTCCAGAAGGAATTGTTAGTG
ATGGTCAAATCAATGACCCTCCAGCAATGGCGCAATTGATTCAGCAGGCCTTGGCTCAAAGCAAAATCAAGACTTCTCGT
GTGGCGACTGGTGTACCAGGTCGTGATTCGATTGTACGGATCATACCTGTACCGGCAGAGTTGGATGATCGGGAACTCCG
GGATATGGTGTTAGACCATGAAGCAGGTTTGTATTTACCCTATCCCCGTGAGGAAGCTGATGTAGATTATCAAAAACTTG
GGTACTTTGTAGATGAGGACGGCATTGAAAAGGTACAGGTGTTGTTAGTTGCTACCCGTAAGGAGGTGACAGATACATAT
ATTCGTACCTTTGAGCAGGCAGGATTGCAAATCAATGTTTTAGAGATTAACAGTTTCGCACTGATTCGGACAATCCGCGA
TCGCCATTTGCGCGAATTAAGTCCACAAGAAGCCGCCGTTTTAGTTGACATCGAGTTCGACAGTACAGAAATAGCCATCA
TTGTTAACGGTATACCCCAATTTTCCCGCACTGTACCCGTTGGCACTTACCAAATGCAAATGGCCTGGGCTAGAGCTATG
AGCTTACCCACATCACGGGATATGGAACTGTTATATGAAATGAAAATTCCCCTAACTCCCATAGACGGTGATAAAACTGG
GATGACGGAAGCTGACCCAGGGATGGCCGGGGTGATGCGAATCTTGGGAGAACTCACAGATGAGCTACGCCGTTCTGTCG
ATTTTTACTTAAATCAAAGTGAAAACTTAGAGGTAGCACAGATTTTCTTAGCTGGGCCTGGAGGTGGGCTACAATATTTA
GATGATTTTTTTACACAAAGACTAAGTATACCTACTACACAAATAGATCCTATTGGGTCTTTGTCCTTGGAAGTTAATCA
AGACGATTACCCCGCAACACAGCGTTCTGGTTTAGGAATAGTTCTTGGTTTAGGAATGCGGGAGGTGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

62.772

99.729

0.626