Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OHT93_RS13480 Genome accession   NZ_CP108130
Coordinates   3000841..3003048 (-) Length   735 a.a.
NCBI ID   WP_406268124.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00191     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2995841..3008048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT93_RS13460 (OHT93_13415) - 2996980..2997852 (+) 873 WP_406268118.1 TetR family transcriptional regulator -
  OHT93_RS13465 (OHT93_13420) - 2997962..2998273 (+) 312 WP_406268121.1 heavy-metal-associated domain-containing protein -
  OHT93_RS13470 (OHT93_13425) - 2998387..2998894 (+) 508 Protein_2667 HAD-IC family P-type ATPase -
  OHT93_RS13475 (OHT93_13430) - 2999322..3000611 (-) 1290 WP_324978645.1 citrate synthase -
  OHT93_RS13480 (OHT93_13435) recD/recD2/recDB 3000841..3003048 (-) 2208 WP_406268124.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHT93_RS13485 (OHT93_13440) - 3003622..3004419 (-) 798 WP_406279415.1 sugar phosphate isomerase/epimerase family protein -
  OHT93_RS13490 (OHT93_13445) - 3004452..3005591 (-) 1140 WP_406268127.1 dihydrodipicolinate synthase family protein -
  OHT93_RS13495 (OHT93_13450) - 3005588..3006739 (-) 1152 WP_406268130.1 Gfo/Idh/MocA family protein -
  OHT93_RS13500 (OHT93_13455) - 3006878..3007942 (+) 1065 WP_406268133.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 79242.63 Da        Isoelectric Point: 6.2246

>NTDB_id=654572 OHT93_RS13480 WP_406268124.1 3000841..3003048(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00191]
MSNLAVLEGVLERITYANEENGYTVARVDTGRDGGDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPKIAERIVDHFGVDTLDIIEQEPKKLIEVPGLGPKRTKLIGAAWEEQKAIKEVMIFLQGVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEEQL
IADAVKLLQVDTGLVIECLAELAGDEEGVVREHVPAPDGGEALTAVYLVPFHRAEISLAAQLGRLLRTAEDRMAAFQDVA
WDKALAWLAERTGAELATEQEQAVRLALTSKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLAELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAD
GGPVPSVRLTRIFRQAQQSGVVTNAHRINSGVQPITSGLSDFFLFVEEETEDAGRVTVDVAARRIPAKFGLDPRRDVQVL
APMHRGPAGAGTLNGLLQEAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGVVTSLQLDDQRLTVVT
DEDEEVPYDFDELDELAHAYAVTIHRSQGSEYLAVVIPVTTGAWMMLQRNLLYTAVTRARKLVVLVGSRKAIGQAVRTVS
AGRRFTALDHRLTGG

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=654572 OHT93_RS13480 WP_406268124.1 3000841..3003048(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00191]
ATGTCCAATCTGGCAGTGCTCGAAGGGGTCCTCGAGCGGATCACGTACGCCAATGAGGAGAACGGCTACACGGTCGCCCG
CGTCGACACCGGCCGCGATGGCGGTGATCTCCTCACGGTGGTCGGCTCGCTGCTCGGCGCGCAGCCGGGCGAGTCCCTGC
GTATGGAGGGCCGCTGGGGCTCCCATCCCCAGTACGGCAAGCAGTTCACGGTGGAGAACTACACCACCGTCCTCCCGGCC
ACCATCCAGGGCATACGCCGCTATCTCGGCTCGGGCCTGATCAAGGGCATCGGCCCGAAAATCGCCGAGCGCATCGTCGA
TCACTTCGGCGTCGACACCCTCGACATCATCGAGCAGGAGCCGAAGAAGCTCATCGAGGTCCCCGGACTCGGCCCGAAGC
GGACGAAGTTGATCGGCGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGATCTTCCTCCAGGGCGTCGGCGTC
TCGACCTCCATCGCGGTGCGTATCTACAAGAAGTACGAGGACGCCTCGATCTCGGTCGTGAAGAACCAGCCGTACCGCCT
GGCCGCCGACGTATGGGGCATCGGCTTCCTCACGGCCGACAGGATCGCGCAGGCGGTCGGCATTCCGCACGACAGCCCCG
AGCGGGTCAAGGCGGGCCTGCAGTACGCCCTGTCGCAGTCCACCGACCAGGGGCACTGCTTCCTGCCCGAGGAGCAGCTG
ATCGCTGACGCGGTGAAGCTGCTCCAGGTCGACACCGGCCTTGTCATCGAGTGTCTCGCCGAACTCGCGGGCGACGAGGA
GGGGGTCGTCCGGGAGCATGTTCCGGCCCCCGACGGCGGCGAGGCGCTGACCGCGGTCTATCTCGTCCCCTTCCACCGCG
CCGAGATCTCGCTCGCGGCTCAGCTGGGCCGTCTGCTGCGTACCGCCGAGGACCGGATGGCGGCTTTCCAGGATGTCGCG
TGGGACAAGGCACTGGCCTGGCTGGCCGAGCGGACGGGCGCCGAGCTGGCGACCGAGCAGGAGCAGGCGGTCCGTCTCGC
GCTCACCAGCAAGGTGGCCGTCCTCACCGGAGGCCCGGGCTGCGGCAAATCGTTCACGGTCCGCTCCATTGTGGAGCTGG
CCCGCGCCAAGAAGGCCAAGGTGGTGCTCGCGGCCCCGACAGGGCGCGCGGCCAAGCGTCTTGCCGAGCTCACCGGAGCC
GAGGCCTCCACCGTGCACCGGCTGCTTGAGCTCAAGCCGGGCGGTGACGCGGCGTACGACCGGGACCGGCCCCTGGACGC
GGACCTGGTGGTGGTCGACGAGGCGTCGATGCTCGATCTGCTGCTGGCCAACAAGCTGGTCAAGGCGGTCGCCCCCGGCG
CGCATCTGCTGCTGGTGGGGGACGTCGACCAGCTGCCGAGCGTCGGCGCGGGCGAAGTGCTGCGCGATCTGCTCGCGGAC
GGCGGCCCGGTGCCCAGCGTCCGCCTCACCCGGATCTTCCGCCAGGCCCAGCAGTCGGGTGTCGTCACCAATGCCCATCG
CATCAATTCCGGTGTCCAGCCCATCACTTCGGGGCTCTCGGACTTCTTTCTCTTCGTGGAGGAGGAGACGGAGGACGCGG
GCAGGGTCACCGTCGATGTGGCCGCCCGCCGGATTCCTGCCAAGTTCGGCCTCGACCCACGGCGCGATGTGCAGGTCCTC
GCGCCGATGCACCGCGGCCCGGCCGGCGCCGGCACGCTCAACGGGCTGCTTCAGGAGGCGATTACCCCCGCGCGGCCGGA
CCTCCCGGAGAAGCGCTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTCACCCAGATTCGCAACAATTACGAGAAAG
GCAAGAACGGCGTCTTCAACGGCACGGTCGGCGTGGTCACCTCGCTCCAACTGGACGATCAGCGGCTGACGGTGGTGACG
GACGAGGACGAGGAGGTTCCGTACGACTTCGACGAGCTGGACGAGCTGGCCCACGCCTATGCCGTGACCATTCACCGCTC
GCAGGGCAGTGAATACCTCGCGGTGGTGATCCCTGTCACCACAGGAGCGTGGATGATGCTGCAGCGGAACCTCCTGTACA
CCGCGGTCACCCGGGCGAGGAAACTCGTCGTGCTGGTCGGCTCCCGCAAGGCGATAGGACAGGCAGTGCGCACCGTTTCC
GCAGGCAGACGCTTCACCGCGCTCGACCACCGGCTGACCGGCGGTTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)

AAA domain (AAA_30)

(336-513)

Helix-hairpin-helix domain (HHH_5)

(94-138)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.471

100

0.369