Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OHU08_RS14270 Genome accession   NZ_CP108128
Coordinates   3278231..3280486 (-) Length   751 a.a.
NCBI ID   WP_164370585.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00197     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3273231..3285486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU08_RS14255 (OHU08_14255) - 3273481..3273720 (+) 240 WP_164370583.1 heavy-metal-associated domain-containing protein -
  OHU08_RS14260 (OHU08_14260) - 3273807..3276056 (+) 2250 WP_266848419.1 cation-translocating P-type ATPase -
  OHU08_RS14265 (OHU08_14265) - 3276699..3277988 (-) 1290 WP_081217371.1 citrate synthase -
  OHU08_RS14270 (OHU08_14270) recD/recD2/recDB 3278231..3280486 (-) 2256 WP_164370585.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHU08_RS14275 (OHU08_14275) - 3280676..3281734 (+) 1059 WP_081217373.1 LacI family DNA-binding transcriptional regulator -
  OHU08_RS14280 (OHU08_14280) - 3281746..3283296 (+) 1551 WP_327411079.1 sugar ABC transporter ATP-binding protein -
  OHU08_RS14285 (OHU08_14285) - 3283286..3285238 (+) 1953 WP_164370586.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81443.99 Da        Isoelectric Point: 6.9757

>NTDB_id=654494 OHU08_RS14270 WP_164370585.1 3278231..3280486(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00197]
MSTQAGADQQGERRPATLEGVLERITYANEESGYTVARVDTGRGAGDLLTVVGALLGAQAGESLRMEGRWGSHPQYGKQF
TVENYTTVLPATIQGIRRYLGSGLVKGIGPVFADRITRHFGLDTLRIIEEEPKRLIEVPGLGPKRTGRIADAWEEQKAIK
EVMLFLQTVEVSTSIAVRIYKKYGDASISVVKNRPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSTD
QGHCYLPEEQLIADAVKLLQVDTGLVIECLAELAAPAEEGEEPGVVREKVPGPDGGDPVTAVYLVPFHRAELSLAAQVLR
LLRTDRDRMPGFRDVAWDKALAWLKDRTGAELAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARARRAKVVLA
APTGRAAKRLSELTGADASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQ
LPSVGAGEVLRDLLADRGPVPAVRLTRVFRQAQQSGVVTNAHRINSGQHPLTDGMKDFFLFVEDDTEEAGRLAVDVAARR
IPAKFGLDPRRDIQVLAPMHRGPAGAGHLNGLLQQAITPGRPDLAEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVG
VVTSLDPVEQRLTVRTDEDEEVGYEFDELDELAHAYALTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVV
LVGSRKAIGQAVRTVSAGRRCTALDFRLSGV

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=654494 OHU08_RS14270 WP_164370585.1 3278231..3280486(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00197]
ATGTCCACTCAGGCGGGGGCCGACCAGCAGGGCGAGCGGCGGCCGGCGACGCTGGAAGGCGTGCTGGAGCGCATCACGTA
CGCGAACGAGGAGAGCGGTTACACGGTCGCGCGGGTCGACACCGGCCGCGGCGCGGGCGACCTGCTCACGGTGGTCGGAG
CGCTCCTCGGCGCGCAGGCCGGCGAGTCCCTGCGTATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTC
ACGGTGGAGAACTACACGACGGTGCTCCCCGCCACGATCCAGGGCATCCGCCGCTATCTCGGCTCCGGCCTGGTCAAGGG
CATCGGCCCCGTCTTCGCCGACCGGATCACCCGGCACTTCGGGCTGGACACCCTGCGGATCATCGAGGAGGAGCCGAAGC
GGCTCATCGAGGTCCCCGGACTCGGCCCCAAGCGCACGGGCCGGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAG
GAGGTCATGCTCTTCCTCCAGACCGTCGAGGTCTCCACCTCCATCGCCGTGCGCATCTACAAGAAGTACGGCGACGCGTC
GATCTCCGTCGTGAAGAACCGGCCCTACCGCCTGGCGTCGGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCG
CCCAGTCGGTCGGTATCCCGCACGACAGCCCGGAGCGCGTCAAGGCCGGCCTCCAGTACGCGCTGTCCCAGTCCACCGAC
CAGGGCCACTGCTATCTCCCGGAGGAGCAACTGATCGCGGACGCGGTGAAGTTGCTCCAGGTCGACACCGGCCTGGTCAT
CGAGTGCCTGGCCGAGCTGGCCGCCCCCGCCGAGGAGGGCGAGGAGCCCGGGGTCGTCCGCGAGAAGGTGCCGGGACCGG
ACGGCGGCGACCCGGTGACGGCGGTCTACCTGGTCCCCTTCCACCGCGCCGAACTGTCCCTCGCCGCCCAGGTGTTGCGC
CTGCTGCGCACCGACCGCGACCGGATGCCCGGCTTCCGCGACGTGGCCTGGGACAAGGCCCTCGCGTGGCTGAAGGACAG
GACGGGCGCGGAGCTGGCCCCCGAGCAGGAGGCGGCCGTCCGGCTCGCGCTCACCGAGAAGGTCGCCGTGCTCACCGGCG
GCCCCGGCTGCGGCAAGTCGTTCACCGTCCGCTCGATCGTCGAGCTGGCCCGCGCCCGGCGCGCCAAGGTGGTCCTCGCC
GCCCCCACCGGCCGGGCCGCCAAGCGGCTCTCCGAGCTGACCGGCGCCGACGCGTCCACCGTCCACCGCCTGTTGGAGCT
CAAGCCGGGCGGCGACGCGGCGTACGACAGGGACCGCCCGCTCGACGCCGACCTGGTCGTCGTCGACGAGGCCTCGATGC
TCGACCTGCTCCTCGCCAACAAGCTGGTCAAGGCGGTGCCCCCGGGCGCGCACCTGCTCTTCGTCGGCGACGTGGACCAG
TTGCCCAGCGTCGGCGCGGGGGAGGTGCTGCGCGACCTGCTCGCCGACCGCGGCCCGGTCCCCGCGGTGCGGCTCACCCG
GGTCTTCCGCCAGGCCCAGCAGTCCGGCGTGGTGACCAACGCGCACCGGATCAACTCCGGGCAGCACCCCCTCACCGACG
GCATGAAGGACTTCTTCCTCTTCGTCGAGGACGACACCGAGGAGGCGGGCCGGCTCGCGGTGGACGTGGCGGCCCGTCGG
ATTCCGGCCAAGTTCGGCCTCGACCCGCGCCGGGACATCCAGGTCCTCGCGCCCATGCACCGGGGCCCCGCGGGCGCCGG
CCATCTCAACGGCCTGCTGCAGCAGGCCATCACCCCCGGCCGCCCCGACCTCGCCGAGAAGCGGTTCGGCGGCCGCGTCT
TCCGCGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGAGAAGGGCGAGAACGGCGTCTTCAACGGCACGGTGGGC
GTCGTCACCTCCCTCGATCCCGTCGAGCAGCGCCTGACGGTGCGCACGGACGAGGACGAGGAGGTGGGGTACGAGTTCGA
CGAACTCGACGAGCTGGCGCACGCCTACGCGCTGACCATCCACCGCTCCCAGGGCAGTGAGTATCCGGCGGTGGTGATCC
CGGTCACCACCAGCGCGTGGATGATGCTCCAGCGCAATCTGCTCTACACAGCGGTTACCCGCGCCAAGAAGCTGGTCGTC
CTCGTCGGTTCGCGCAAGGCGATCGGCCAGGCGGTGCGTACGGTGTCGGCGGGACGCCGGTGCACGGCCCTGGACTTCCG
GCTCTCCGGCGTCTGA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)

AAA domain (AAA_30)

(351-530)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

Helix-hairpin-helix domain (HHH_5)

(105-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.53

100

0.366