Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   L8956_RS18025 Genome accession   NZ_CP091882
Coordinates   3800692..3803067 (-) Length   791 a.a.
NCBI ID   WP_057276618.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain JHS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3760431..3803067 3800692..3803067 within 0


Gene organization within MGE regions


Location: 3760431..3803067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8956_RS17845 (L8956_17845) - 3760431..3761075 (-) 645 WP_239858532.1 acetyltransferase -
  L8956_RS17850 (L8956_17850) - 3761072..3761716 (-) 645 WP_284145142.1 sugar transferase -
  L8956_RS17855 (L8956_17855) - 3761716..3762831 (-) 1116 WP_239858533.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  L8956_RS17860 (L8956_17860) galU 3763046..3763939 (-) 894 WP_239858534.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  L8956_RS17865 (L8956_17865) - 3763959..3765779 (-) 1821 WP_239858535.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  L8956_RS17870 (L8956_17870) - 3766079..3766843 (-) 765 WP_239858536.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -
  L8956_RS17875 (L8956_17875) - 3766982..3767668 (-) 687 WP_347881698.1 CpsD/CapB family tyrosine-protein kinase -
  L8956_RS17880 (L8956_17880) - 3767698..3768378 (-) 681 WP_239858537.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  L8956_RS17885 (L8956_17885) - 3768854..3769153 (+) 300 WP_239858538.1 helix-turn-helix domain-containing protein -
  L8956_RS17890 (L8956_17890) - 3769258..3770097 (-) 840 WP_239858539.1 SGNH/GDSL hydrolase family protein -
  L8956_RS17895 (L8956_17895) - 3770860..3771051 (+) 192 WP_034308728.1 hypothetical protein -
  L8956_RS17900 (L8956_17900) - 3771208..3773205 (-) 1998 WP_239858540.1 CDP-glycerol glycerophosphotransferase family protein -
  L8956_RS17905 (L8956_17905) - 3773846..3774226 (+) 381 WP_239861488.1 helix-turn-helix domain-containing protein -
  L8956_RS17910 (L8956_17910) - 3774518..3776401 (-) 1884 WP_239858541.1 S8 family serine peptidase -
  L8956_RS17915 (L8956_17915) - 3777390..3778097 (-) 708 WP_034308744.1 ABC transporter ATP-binding protein -
  L8956_RS17920 (L8956_17920) - 3778097..3778879 (-) 783 WP_034308746.1 ABC transporter ATP-binding protein -
  L8956_RS17925 (L8956_17925) - 3778851..3779816 (-) 966 WP_034308749.1 branched-chain amino acid ABC transporter permease -
  L8956_RS17930 (L8956_17930) - 3779830..3780708 (-) 879 WP_034308751.1 branched-chain amino acid ABC transporter permease -
  L8956_RS17935 (L8956_17935) - 3780871..3782049 (-) 1179 WP_057276608.1 ABC transporter substrate-binding protein -
  L8956_RS17940 (L8956_17940) - 3782599..3783306 (-) 708 WP_095678486.1 ABC transporter ATP-binding protein -
  L8956_RS17945 (L8956_17945) - 3783306..3784085 (-) 780 WP_063590527.1 ABC transporter ATP-binding protein -
  L8956_RS17950 (L8956_17950) - 3784060..3785031 (-) 972 WP_034308758.1 branched-chain amino acid ABC transporter permease -
  L8956_RS17955 (L8956_17955) - 3785045..3785923 (-) 879 WP_034308761.1 branched-chain amino acid ABC transporter permease -
  L8956_RS17960 (L8956_17960) - 3786000..3787187 (-) 1188 WP_057276612.1 ABC transporter substrate-binding protein -
  L8956_RS17965 (L8956_17965) - 3787377..3788138 (-) 762 WP_048684392.1 tRNA threonylcarbamoyladenosine dehydratase -
  L8956_RS17970 (L8956_17970) - 3788250..3789398 (-) 1149 WP_347881699.1 M20 family metallopeptidase -
  L8956_RS17975 (L8956_17975) - 3789462..3789770 (+) 309 WP_239858542.1 hypothetical protein -
  L8956_RS17980 (L8956_17980) - 3789761..3790732 (-) 972 WP_063575575.1 nuclease-related domain-containing protein -
  L8956_RS17990 (L8956_17990) aspS 3791607..3793376 (-) 1770 WP_057276615.1 aspartate--tRNA ligase -
  L8956_RS17995 (L8956_17995) hisS 3793389..3794660 (-) 1272 WP_063590525.1 histidine--tRNA ligase -
  L8956_RS18000 (L8956_18000) - 3795075..3795248 (-) 174 WP_239858543.1 hypothetical protein -
  L8956_RS18005 (L8956_18005) - 3795378..3797147 (+) 1770 WP_239858544.1 SH3 domain-containing protein -
  L8956_RS18010 (L8956_18010) dtd 3797213..3797656 (-) 444 WP_057276617.1 D-aminoacyl-tRNA deacylase -
  L8956_RS18015 (L8956_18015) - 3797672..3799870 (-) 2199 WP_034308787.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  L8956_RS18020 (L8956_18020) - 3800189..3800701 (-) 513 WP_034308789.1 adenine phosphoribosyltransferase -
  L8956_RS18025 (L8956_18025) recJ 3800692..3803067 (-) 2376 WP_057276618.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 88993.54 Da        Isoelectric Point: 4.8054

>NTDB_id=654237 L8956_RS18025 WP_057276618.1 3800692..3803067(-) (recJ) [Peribacillus frigoritolerans strain JHS1]
MLKPKTRWNLRTADENKVAVLAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIKEAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVAEAKLAAEL
GMDYILTDHHEPGPQLPEALAIIHPKLEDSSYPFKELAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSASLEEAMELANEINDINKE
RQEMVAAMAEEAIAEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDRDKGLAKGSARSIVGFDLF
QSLSQCREMLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEELNEEDFTPITNLDGATTLAEVSIQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDGEKHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVDHWQLFDYRGKGQAEKWLADIPAQNRKIVIFSEDIYSRYPFLQNHPDLVHIENELDAEQLDCFEGHLVLMDMPPS
REYLKRAVAKKNPSRIYAHFSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVEFISKVFFEL
DFVTIENGLIMLTTNAKKRDLSESESYTRKKEQFELEQELVYSSYQQLFDWFNHYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=654237 L8956_RS18025 WP_057276618.1 3800692..3803067(-) (recJ) [Peribacillus frigoritolerans strain JHS1]
ATGTTAAAGCCAAAAACCCGGTGGAACTTGCGAACTGCCGATGAAAACAAAGTTGCTGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGGATACGATTGAAAGTGCCCGATCGTTTTTATTTGTAAAAA
ATCAAACTTTTCATGACCCATTTTTATTGAAGGATATGGATAAAGCAGTATATAGAATAAAAGAAGCGATTCAAAATGGA
GAAAAAATACGTATATTCGGTGACTATGATGCGGATGGCGTGACATCGACCACCGTGATGATGACGGCGCTGACGAGATT
GGGGGCCGATGTTGATTTTTATATCCCGAATCGGTTTACAGAAGGATATGGTCCGAATCCGATGGCATTCCGCCTTGCTG
CCGAGCAAGGTGTGAAGGTATTGATAACCGTCGATACCGGGATCTCCGCAGTCGCTGAAGCGAAACTTGCCGCCGAGCTA
GGCATGGATTATATTTTGACTGACCACCATGAACCGGGACCGCAATTGCCTGAGGCATTGGCGATCATCCATCCTAAACT
TGAGGACAGTTCCTATCCATTTAAAGAACTTGCCGGAGTAGGGGTCGCATTTAAGCTTGCACACGCCTTGCTCGGGGAAT
TGCCTGAGGATTTGCTTGAAATAGCGGCAATCGGCACGATAGCGGATTTAGTGCCGTTACAAGGGGAAAACCGTGTCATT
GCTGCGAAAGGCATCGAGCAGTTACGATTGACTCGCCGCCCGGGACTTGTTGCGTTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGCTTTGCAATGGCGCCGAGGATCAATGCTGTCGGGCGCCTTGGAGATGCCGATC
CCGCTGTTGATTTATTGATGTCCGCAAGTCTCGAAGAAGCAATGGAACTTGCTAATGAAATCAACGATATCAATAAAGAG
CGGCAGGAAATGGTTGCAGCAATGGCTGAGGAAGCGATTGCTGAAGTCGAGGAAAACTTCCCGCCGGAGTCCAATGGCGT
GCTCATCATCGGCAGGGAAGGCTGGAATGCCGGAGTTGTAGGGATTGTGGCCTCTAAACTTGTTGAACGCTTTTACCGGC
CGACGATTGTATTGAGCTATGATCGGGATAAGGGATTAGCTAAAGGTTCTGCTCGGAGCATCGTTGGTTTCGATCTTTTT
CAAAGTCTTTCCCAATGCCGTGAAATGCTGCCCCATTTCGGCGGACATCCTATGGCAGCTGGAATGACGTTGAAAATAGA
AGATGTTCAGGAGCTTAGGGACCGCATGAACTTGATTGCGAAGGAAGAACTGAACGAAGAGGACTTCACACCGATTACAA
ACTTGGACGGTGCTACGACTTTAGCTGAAGTTTCCATTCAAACGATTCAGGAAATGAGCTTGCTTGCACCATTTGGGGTT
ACGAATCCCAAGCCGAAGATTTTGATAGATTCCGTACAACTTTCAAGTGTCCGCAAAATTGGTGCCAACCAAAATCACTT
GAAGGTTCAGCTGGAAGATGGTGAAAAACACAAACTTGACGGTGTGGGCTTCGGTCTCGGTCATTTTGTCGATGAAATAG
CTCCGCACGCTGAAGTTTCGGTGATTGGAGAGCTCTCCATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTGGACCATTGGCAGTTATTCGATTACCGCGGCAAGGGACAGGCAGAGAAGTGGCTTGCCGACATTCC
TGCACAAAACCGGAAGATCGTCATTTTCTCGGAAGATATTTATAGCAGATATCCATTTTTGCAAAACCATCCAGATCTCG
TTCATATCGAGAATGAACTGGATGCTGAGCAGCTCGACTGCTTCGAAGGGCATTTGGTACTCATGGACATGCCGCCGTCC
AGGGAATATTTGAAACGGGCGGTTGCCAAAAAGAACCCTTCCCGTATCTACGCTCACTTTTCCCATGAACAGGACCATTT
CTTAAGTACGATGCCGACAAGGGATCATTTTAAATGGTTTTATGCCTTCCTTGCCAAGAAGGGTCCGCTTGATGTGAAAA
GATATGGTGATGACCTGGCCAAATATCGCGGCTGGTCAAGAGATACAGTGGAATTCATTTCTAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAGAATGGGTTAATTATGCTCACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTA
TACAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(310-437)

RecJ OB domain (RecJ_OB)

(456-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.855

100

0.55