Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   L8956_RS17665 Genome accession   NZ_CP091882
Coordinates   3715798..3718203 (-) Length   801 a.a.
NCBI ID   WP_239858506.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain JHS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3710798..3723203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8956_RS17640 (L8956_17640) - 3712273..3713349 (-) 1077 WP_095678537.1 AI-2E family transporter -
  L8956_RS17645 (L8956_17645) - 3713576..3713791 (-) 216 WP_034311361.1 hypothetical protein -
  L8956_RS17650 (L8956_17650) - 3713781..3714239 (-) 459 WP_063575627.1 PRC-barrel domain-containing protein -
  L8956_RS17655 (L8956_17655) - 3714376..3715146 (-) 771 WP_239858505.1 TPM domain-containing protein -
  L8956_RS17660 (L8956_17660) - 3715146..3715712 (-) 567 WP_096337759.1 LemA family protein -
  L8956_RS17665 (L8956_17665) recD2 3715798..3718203 (-) 2406 WP_239858506.1 ATP-dependent RecD-like DNA helicase Machinery gene
  L8956_RS17670 (L8956_17670) - 3718240..3718905 (-) 666 WP_057277059.1 tetratricopeptide repeat protein -
  L8956_RS17675 (L8956_17675) mnmA 3719027..3720142 (-) 1116 WP_063575623.1 tRNA 2-thiouridine(34) synthase MnmA -
  L8956_RS17680 (L8956_17680) - 3720172..3721317 (-) 1146 WP_239858507.1 cysteine desulfurase family protein -
  L8956_RS17685 (L8956_17685) - 3721378..3721797 (-) 420 WP_034308657.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90524.28 Da        Isoelectric Point: 4.8218

>NTDB_id=654235 L8956_RS17665 WP_239858506.1 3715798..3718203(-) (recD2) [Peribacillus frigoritolerans strain JHS1]
MSQQDSLDLFSEEKKFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQFHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGDKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFLLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDVTKQQEDRSFIRCQTNQIPQ
VIEKVVANARTKGFTAKDIQVLAPMYRGPAGIDALNKMLQEVFNSNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDSVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLREILSEEEMPVEKGEVHQEASYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=654235 L8956_RS17665 WP_239858506.1 3715798..3718203(-) (recD2) [Peribacillus frigoritolerans strain JHS1]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAAGAGAAAAAGTTCATGAAAGGCAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTTGTGAGAATTCGTGTGCATGAAACGAATCTGAATTATGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGGGCCATGAAGGAACATCCGCGATTTGGC
CTTCAATTCCATGTAGAGCATTTTCGCAAGGATTTGCCTCAATCCAAGGAAGGCATCGTCAGTTATTTATCAGGTGACCT
TTTCAAGGGCATTGGGAAAAAAACAGCCGAAAGCATTGTTGAGACACTGGGTGATAAGGCCATTTCAAAAATTCTGGCTC
AGCCTTCGCTGCTTGATGATATCCCGAAGCTATCAGGGGAAAAGGCAAAAGGCCTCTATGATACATTAGTCGAGCATCAA
GGTCTGGAGCAGGTTATGATCGCCTTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAAATCTATCAAATGTATAA
GCAGGATACGATCACGATGGTTCAGGGTAATCCGTATAAGCTCGTAGAGGATATTGAAGGGATTGGGTTTGGACGGGCGG
ATGAGCTTGGGCATCAGCTGGGCATTTCCGGCAGCCACCCCGACCGAATCAAGGCTGCGTGCTTGTATACGCTTGAATCC
CAATGCCTCCAGGACGGAAATATCTACATAGAAGCCGAGCAGCTCTTGGAAGCGGTCAAACGGCTGCTGGAGGAAAATAA
ACGGGATCGCATTGAGTTCACCAACATTTCCTCGGAAATAATCGAATTAACGCAAGAGGGGAAAATAGTTGTCGAGGATC
AACGAATTTATCCGCCTTCGCTATTCTATTCGGAAAAGGGAATCGTGATGAACATCAAGCGGCTGCTTGCTCAAACCGAG
TATGAGGACCAGTTCCCCGAATCGGAGTTCTTGCTGGCACTTGGGGAGCTGGAAGAGCGGCTCGATGTTTCCTATGCCCC
GGCCCAAAAGGAAGCGATCCAGACAGCCCTGCAATCGCCGATGTTAATCTTGACTGGGGGACCTGGTACCGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAGCTATATGCAGAGCTGCATGGTGTATCCATGGACATTAACGATTATAAAAAAGAAGGA
AGCGATCCCTTTCCATTCGTACTTGCGGCTCCTACTGGCCGTGCAGCGAAACGCATGGCCGAGTCGACGGGGCTCCCCGC
AGTCACGATCCACCGTTTGCTGGGGTGGAACGGAAGTGAAGGCTTTTCCCATGATGAGGATAATCAGCTGGATGGCCGTA
TCGTGATCATCGATGAGGTTTCGATGGTGGATACGTGGCTGGCCCATCAATTGTTTAAAGCTCTGCCGGAAAATGTCCAA
GTGATATTGGTTGGTGATGAAGATCAGCTGCCATCTGTTGGACCTGGGCAGGTTTTAAAGGATTTGCTTGCATCAAATTG
TGTACCGACTGTCAGTCTCGAACATATATATCGTCAAGCTGATGGGTCATCGATCATTGAATTGGCCCATGAAATCAAAA
AAGGAAGGCTTCCGGATGATGTTACGAAACAGCAGGAAGATCGATCGTTCATTCGCTGCCAAACGAATCAAATCCCCCAA
GTGATCGAGAAAGTGGTTGCCAATGCCAGGACGAAAGGCTTCACGGCCAAAGATATACAGGTGCTGGCTCCCATGTATAG
AGGACCTGCCGGAATTGATGCACTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGAATGAAAAGCGGCGGGAAA
TAAAATTCGGCGATGTGATATATAGAACCGGAGATAAGGTGCTTCAACTGGTGAACCAGCCGGAAGAGGGTGTCTTTAAT
GGCGATATGGGGGAAATCGTGTCCATATTGTTCGCTAAAGAAAATACCGATTCTGTCGATAAAGTGATCATATCGTTCGA
AGGCATCGAAGTGACTTATACAAAGCAGGATTTGAACCAGATCACACATGCCTATTGCTGCTCCATCCATAAGTCGCAGG
GAAGCGAATTCCCTATCGTCATTTTACCTGTAGTGAAAAGTTATTACCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTATGTGGTGAAGAAGATGCATTCCGTTTAGGGATCGAGCGTAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCGGGAGATCTTGAGTGAAGAAGAGATGCCGGTTGAAAAGGGAGAGGTGC
ATCAAGAGGCAAGTTATCTTGATATTCTAATGCATGCTGACCCGATGATCGGGATGGAGAATGTCACGCCATATGATTTT
ATGTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-555)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.672

100

0.627