Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG729_RS26940 Genome accession   NZ_CP108120
Coordinates   5976894..5978816 (-) Length   640 a.a.
NCBI ID   WP_405808397.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00210     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5971894..5983816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG729_RS26925 (OG729_26890) - 5972080..5973342 (+) 1263 WP_405808394.1 NAD(P)/FAD-dependent oxidoreductase -
  OG729_RS26930 (OG729_26895) dnaG 5973377..5975275 (+) 1899 WP_405808395.1 DNA primase -
  OG729_RS26935 (OG729_26900) - 5975393..5976646 (+) 1254 WP_405808396.1 sigma-70 family RNA polymerase sigma factor -
  OG729_RS26940 (OG729_26905) rcrQ 5976894..5978816 (-) 1923 WP_405808397.1 ABC transporter ATP-binding protein Regulator
  OG729_RS26945 (OG729_26910) rcrP 5978813..5980546 (-) 1734 WP_405811301.1 ABC transporter ATP-binding protein Regulator
  OG729_RS26950 (OG729_26915) - 5980650..5982095 (-) 1446 WP_360879721.1 FGGY family carbohydrate kinase -
  OG729_RS26955 (OG729_26920) - 5982131..5982430 (-) 300 WP_360879718.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69152.65 Da        Isoelectric Point: 5.3105

>NTDB_id=654201 OG729_RS26940 WP_405808397.1 5976894..5978816(-) (rcrQ) [Streptomyces sp. NBC_00210]
MSGPGGRMMMGPVERSMDFKGSGKRLLRQLAPERMTLWVMLAAGVLSVAFAVVGPKILGQATDLVFAGVVGREMPAGTSK
EQAIAGLRDKDQGGLADMLSGVGFTPGDGIDFTAVGHVLLVALVVYLAAGLLMLVATRLSIRVINRTVYRMREDVQAKLS
RLPLSYFDRAKRGEVLSRATNDIDNISQTLQQTMGQLINSLLTIVGVLAMMFWISPLLALVALVTVPVSVFVATKIGKRS
QPHFVQQWKSTGKLNAHIEEMYTGHALVKVFGRQDESAKDFAEQNEALYEAGFKAQFNSGVMQPLMFFVSNLNYVLVAVV
GGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQEADEPTGERSRRPLGQVALEKV
AFRYDPDKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRISLDGVDIAKMSREELRSGIGMVLQDTWL
FGGTIADNIAYGASREVTRAEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGAIVEQGTHDELLAAEGAYARLYAAQFAQAVVEVE

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=654201 OG729_RS26940 WP_405808397.1 5976894..5978816(-) (rcrQ) [Streptomyces sp. NBC_00210]
ATGAGCGGGCCGGGCGGACGGATGATGATGGGCCCCGTCGAGCGGTCCATGGACTTCAAGGGCTCGGGCAAGCGGCTGCT
GCGGCAGCTCGCTCCCGAGCGTATGACGCTGTGGGTGATGCTCGCGGCGGGTGTGCTGAGCGTCGCGTTCGCGGTGGTCG
GGCCCAAGATTCTGGGGCAGGCGACCGACCTGGTCTTCGCCGGGGTCGTCGGCCGGGAGATGCCGGCCGGGACCAGCAAG
GAACAGGCGATCGCCGGCCTGCGGGACAAGGACCAGGGCGGGCTGGCCGACATGCTGTCCGGCGTGGGCTTCACGCCCGG
CGACGGCATCGACTTCACCGCCGTGGGCCATGTGCTGCTGGTGGCGCTGGTGGTGTATCTGGCCGCGGGTCTGCTGATGC
TGGTGGCGACGCGGCTGTCGATCCGGGTGATCAACAGGACCGTCTACCGGATGCGCGAGGACGTACAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGGGGCGAGGTGCTCAGCCGGGCGACCAACGACATCGACAACATCTC
GCAGACGCTCCAGCAGACGATGGGCCAGCTGATCAACTCGCTGCTGACCATCGTGGGCGTGCTGGCGATGATGTTCTGGA
TCTCGCCGCTGCTCGCGCTGGTCGCGCTGGTGACGGTGCCGGTGTCGGTGTTCGTGGCGACGAAGATCGGCAAGCGCTCG
CAGCCGCACTTCGTGCAGCAGTGGAAGTCCACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGCCATGCGCT
GGTGAAGGTCTTCGGGCGGCAGGACGAGTCGGCCAAGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCGGGGTTCA
AGGCCCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGTTCTTCGTGTCGAACCTCAACTATGTGCTGGTTGCGGTCGTC
GGCGGGCTGCGGGTCGCGTCCGGCGCGCTGTCGATCGGCGATGTGCAGGCGTTCATCCAGTACTCCCGGCAGTTCTCGAT
GCCGCTCACCCAGGTCGCTTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCCTCGGCCGAGCGGGTCTTCGAGCTGCTGG
ACGCCGAGGAGCAGGAGGCCGACGAGCCGACGGGCGAGCGGTCCCGGCGTCCGCTCGGACAGGTCGCGCTCGAGAAGGTC
GCCTTCCGCTACGACCCGGACAAGCCGCTCATCGAGGATCTCTCGCTGAGCGTGGAGCCGGGCCACACGGTCGCGATCGT
CGGTCCGACCGGCGCGGGCAAGACGACCCTGGTGAATCTGCTGATGCGGTTCTACGAGGTCACGGGCGGCCGGATCAGCC
TGGACGGCGTGGACATCGCGAAGATGTCCCGGGAAGAACTGCGGTCCGGGATAGGGATGGTCCTCCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGGACAACATCGCGTACGGCGCCTCCCGCGAGGTGACCCGGGCGGAGATCGAGGAAGCGGCGCG
AGCAGCGCACGCCGACCGTTTCATCCGTACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCTCGGGCGTGA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAGGCCACC
AGCTCGGTTGACACCCGTACCGAGGTGCTCATCCAGAAGGCGATGGCGCGGCTCGCCCACGGCCGTACGAGCTTTGTCAT
CGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGCGCGATCGTGGAACAGGGCACGC
ATGACGAGCTGTTGGCCGCGGAGGGGGCGTATGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGTGGAGGTGGAG
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(43-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.357

96.406

0.389