Detailed information
Bioinformatically predicted
Overview
| Name | recD2 | Type | Machinery gene |
| Locus tag | MAK07_RS04640 | Genome accession | NZ_CP091875 |
| Coordinates | 831180..833657 (+) | Length | 825 a.a. |
| NCBI ID | WP_001283316.1 | Uniprot ID | A0AAJ4YV87 |
| Organism | Staphylococcus aureus strain MN8 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 798091..834738 | 831180..833657 | within | 0 |
Gene organization within MGE regions
Location: 798091..834738
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MAK07_RS04465 (MAK07_08690) | - | 798750..799034 (+) | 285 | WP_000171861.1 | hypothetical protein | - |
| MAK07_RS04470 (MAK07_08685) | - | 799150..799347 (-) | 198 | WP_000025835.1 | hypothetical protein | - |
| MAK07_RS04475 (MAK07_08680) | - | 799507..799980 (+) | 474 | WP_001236733.1 | DUF4930 family protein | - |
| MAK07_RS04480 (MAK07_08675) | - | 800054..800173 (+) | 120 | WP_000840603.1 | hypothetical protein | - |
| MAK07_RS04485 (MAK07_08670) | mreC | 800373..801215 (+) | 843 | WP_000911041.1 | rod shape-determining protein MreC | - |
| MAK07_RS04490 (MAK07_08665) | mreD | 801215..801745 (+) | 531 | WP_001259929.1 | rod shape-determining protein MreD | - |
| MAK07_RS04495 (MAK07_08660) | rplU | 802038..802346 (+) | 309 | WP_000457386.1 | 50S ribosomal protein L21 | - |
| MAK07_RS04500 (MAK07_08655) | - | 802352..802672 (+) | 321 | WP_000633692.1 | ribosomal-processing cysteine protease Prp | - |
| MAK07_RS04505 (MAK07_08650) | rpmA | 802684..802968 (+) | 285 | WP_000916187.1 | 50S ribosomal protein L27 | - |
| MAK07_RS04510 (MAK07_08645) | obgE | 803455..804747 (+) | 1293 | WP_000496098.1 | GTPase ObgE | - |
| MAK07_RS04515 (MAK07_08640) | - | 804760..805215 (+) | 456 | WP_000368902.1 | ACT domain-containing protein | - |
| MAK07_RS04520 (MAK07_08635) | ruvA | 805229..805831 (+) | 603 | WP_000271546.1 | Holliday junction branch migration protein RuvA | - |
| MAK07_RS04525 (MAK07_08630) | ruvB | 805863..806867 (+) | 1005 | WP_001005767.1 | Holliday junction branch migration DNA helicase RuvB | - |
| MAK07_RS04530 (MAK07_08625) | queA | 806869..807894 (+) | 1026 | WP_001019178.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| MAK07_RS04535 (MAK07_08620) | tgt | 807917..809056 (+) | 1140 | WP_001112045.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| MAK07_RS04540 (MAK07_08615) | yajC | 809075..809335 (+) | 261 | WP_001160682.1 | preprotein translocase subunit YajC | - |
| MAK07_RS04545 (MAK07_08610) | secDF | 809610..811889 (+) | 2280 | WP_000749802.1 | protein translocase subunit SecDF | - |
| MAK07_RS04550 (MAK07_08605) | recJ | 812092..814365 (+) | 2274 | WP_000595001.1 | single-stranded-DNA-specific exonuclease RecJ | - |
| MAK07_RS04555 (MAK07_08600) | - | 814387..814905 (+) | 519 | WP_000364542.1 | adenine phosphoribosyltransferase | - |
| MAK07_RS04560 (MAK07_08595) | - | 815333..817522 (+) | 2190 | WP_001058583.1 | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | - |
| MAK07_RS04565 (MAK07_08590) | dtd | 817534..817986 (+) | 453 | WP_000869977.1 | D-aminoacyl-tRNA deacylase | - |
| MAK07_RS04570 (MAK07_08585) | - | 817983..818858 (+) | 876 | WP_000717800.1 | N-acetylmuramoyl-L-alanine amidase | - |
| MAK07_RS04575 (MAK07_08580) | hisS | 819319..820581 (+) | 1263 | WP_000590821.1 | histidine--tRNA ligase | - |
| MAK07_RS04580 (MAK07_08575) | aspS | 820597..822363 (+) | 1767 | WP_000044796.1 | aspartate--tRNA ligase | - |
| MAK07_RS04590 (MAK07_08565) | - | 822696..822824 (+) | 129 | WP_001791215.1 | hypothetical protein | - |
| MAK07_RS04595 (MAK07_08560) | - | 822824..823597 (+) | 774 | WP_000682640.1 | tRNA threonylcarbamoyladenosine dehydratase | - |
| MAK07_RS04600 (MAK07_08555) | - | 823758..825032 (-) | 1275 | WP_000102741.1 | replication-associated recombination protein A | - |
| MAK07_RS04605 (MAK07_08550) | - | 825117..825539 (+) | 423 | WP_000704122.1 | Rrf2 family transcriptional regulator | - |
| MAK07_RS04610 (MAK07_08545) | - | 825639..825821 (+) | 183 | WP_000752909.1 | CsbD family protein | - |
| MAK07_RS04615 (MAK07_08540) | - | 825861..826007 (+) | 147 | WP_000008061.1 | SAS049 family protein | - |
| MAK07_RS04620 (MAK07_08535) | - | 826244..827257 (-) | 1014 | WP_000985898.1 | LLM class flavin-dependent oxidoreductase | - |
| MAK07_RS04625 (MAK07_08530) | - | 827567..828709 (+) | 1143 | WP_000409167.1 | cysteine desulfurase family protein | - |
| MAK07_RS04630 (MAK07_08525) | mnmA | 828710..829828 (+) | 1119 | WP_000066097.1 | tRNA 2-thiouridine(34) synthase MnmA | - |
| MAK07_RS04635 (MAK07_08520) | - | 830510..831178 (+) | 669 | WP_000567025.1 | tetratricopeptide repeat protein | - |
| MAK07_RS04640 (MAK07_08515) | recD2 | 831180..833657 (+) | 2478 | WP_001283316.1 | ATP-dependent RecD-like DNA helicase | Machinery gene |
Sequence
Protein
Download Length: 825 a.a. Molecular weight: 92950.67 Da Isoelectric Point: 4.4945
>NTDB_id=654084 MAK07_RS04640 WP_001283316.1 831180..833657(+) (recD2) [Staphylococcus aureus strain MN8]
MSDPTLFDYSMIKGTVEAILFQNSDNFYTVLKVDTIETNEDFDTMPTVVGFLPNIVEGDVYTFKGQVVDHPRYGKQLKAE
TFEKEMPQTKEAIISYLSSDLFKGVGKKTAQNIVNTLGDNAINDILDDHSVLEKVSGLSKKKQKQIAEQISANQESEKIM
IRLHDLGFGPKLSMAIYQFYLGDTLTILDRNPYQLIYDIKGIGFNKADQLARNIGIAYNDNERLKAALLYTLEEECIKQG
HTYLPINVVIDLTVDVLNYQDEEVIEPEKLDEMLQYLNEEKRLIIDNEQVAIPSLYYSEIKSVQNLFRIKTHTNKLTEIE
QSDLQMHIGEIEDANQVNYAASQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYVNDDYPVVLA
APTGRASKRLQESTGLEAMTIHRLIGWNQDTKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQLIFVGDEDQ
LPSVGPGQVFKDLIESKAIPRVNLTEVYRQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQANQIPTVVEKVVTSAV
NKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFTKQDMMELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKTSLVLL
GDSEAFDIGLKTNGQARLTQLCTLLKNYFNSEDEDMLENTATNDTGASQTTIDDQVEAPMSSNASEEVTSDSTKTDTNVL
TEATMFKIDPMINMGEITPYDFIER
MSDPTLFDYSMIKGTVEAILFQNSDNFYTVLKVDTIETNEDFDTMPTVVGFLPNIVEGDVYTFKGQVVDHPRYGKQLKAE
TFEKEMPQTKEAIISYLSSDLFKGVGKKTAQNIVNTLGDNAINDILDDHSVLEKVSGLSKKKQKQIAEQISANQESEKIM
IRLHDLGFGPKLSMAIYQFYLGDTLTILDRNPYQLIYDIKGIGFNKADQLARNIGIAYNDNERLKAALLYTLEEECIKQG
HTYLPINVVIDLTVDVLNYQDEEVIEPEKLDEMLQYLNEEKRLIIDNEQVAIPSLYYSEIKSVQNLFRIKTHTNKLTEIE
QSDLQMHIGEIEDANQVNYAASQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYVNDDYPVVLA
APTGRASKRLQESTGLEAMTIHRLIGWNQDTKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQLIFVGDEDQ
LPSVGPGQVFKDLIESKAIPRVNLTEVYRQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQANQIPTVVEKVVTSAV
NKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFTKQDMMELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKTSLVLL
GDSEAFDIGLKTNGQARLTQLCTLLKNYFNSEDEDMLENTATNDTGASQTTIDDQVEAPMSSNASEEVTSDSTKTDTNVL
TEATMFKIDPMINMGEITPYDFIER
Nucleotide
Download Length: 2478 bp
>NTDB_id=654084 MAK07_RS04640 WP_001283316.1 831180..833657(+) (recD2) [Staphylococcus aureus strain MN8]
ATGTCAGACCCTACACTATTTGATTATTCAATGATCAAAGGTACTGTTGAAGCGATATTGTTTCAAAACAGTGATAATTT
TTATACAGTGCTTAAAGTAGATACTATTGAAACAAATGAAGACTTTGATACAATGCCAACTGTTGTAGGGTTTCTTCCGA
ATATTGTTGAAGGCGATGTCTACACATTTAAAGGGCAAGTTGTTGATCATCCACGTTATGGTAAACAATTAAAAGCAGAG
ACTTTTGAAAAAGAAATGCCACAAACGAAAGAAGCAATTATAAGTTATTTATCAAGTGATTTGTTTAAAGGTGTAGGTAA
AAAGACAGCTCAAAATATTGTTAATACATTAGGTGACAATGCGATAAACGATATATTAGATGACCATTCAGTTCTAGAAA
AAGTTTCGGGATTATCTAAAAAGAAACAGAAACAAATTGCAGAACAAATTTCAGCAAATCAAGAATCTGAAAAAATAATG
ATTCGTTTACATGATTTAGGGTTTGGTCCTAAACTTTCAATGGCAATTTATCAGTTTTATCTCGGTGATACACTGACTAT
TTTAGATCGAAATCCATATCAATTGATTTATGATATTAAAGGTATTGGTTTTAATAAAGCAGATCAACTTGCTAGAAATA
TTGGTATCGCTTATAACGATAATGAACGATTAAAAGCTGCGTTGCTCTATACGTTAGAAGAAGAATGTATTAAACAGGGA
CATACATATTTGCCTATCAATGTTGTTATAGATTTAACGGTTGATGTCTTAAATTATCAAGATGAAGAGGTCATCGAACC
TGAAAAATTAGACGAAATGTTGCAATACTTAAATGAGGAAAAACGACTAATTATTGACAATGAACAAGTTGCAATTCCAA
GTTTGTATTATTCTGAAATCAAAAGTGTTCAAAACTTATTCAGAATAAAGACGCATACAAATAAACTTACGGAAATTGAA
CAGTCAGATTTACAAATGCATATTGGCGAAATAGAGGATGCGAATCAAGTGAACTATGCAGCTTCACAAAAAGAAGCTTT
GCAAACGGCTATCAATTCTAAGGTGATGCTATTAACCGGTGGACCGGGAACAGGAAAGACGACAGTAATTAAAGGCATTG
TAGAATTATATGCTGAGATTCATGGCTTATCATTAGATTATGATGATTATGTCAATGATGATTATCCAGTTGTATTAGCA
GCGCCAACAGGAAGAGCGTCCAAGAGACTACAAGAGTCAACTGGATTAGAAGCTATGACGATTCATCGTTTAATAGGTTG
GAATCAAGACACAAAGCCAGAGGATATATTAGAAAATGAAATTAACGCACGACTCATAATCATTGATGAGATGTCTATGG
TAGATACTTGGTTGTTCCACCAATTTTTAAGTGCAGTTCCTTTAGATGCACAATTGATATTTGTAGGTGATGAGGACCAA
TTGCCTTCTGTAGGTCCTGGTCAAGTATTTAAAGATTTAATTGAATCGAAAGCTATACCACGAGTTAATCTGACTGAAGT
ATATCGTCAACAAGATGGTTCAAGCATTATAGAATTAGCACATCGAATGAAGTTGGGTCAGAAAATTGATATTACACAGC
GTTTTCATGATAGAAGTTTTATTAACTGTCAGGCAAACCAAATACCAACAGTTGTTGAGAAGGTAGTTACTAGTGCTGTT
AATAAAGGGTATACTATGGCTGATATTCAAGTGCTTGCACCAATGTATAAAGGAAATGCCGGTATTAAACGTTTAAATCA
AGTTTTACAAGATATTTTAAACCCTAAAAAGAAAGACACACGAGAAATTGAGTTTGGTGATGTAGTCTTTAGAAAAGGTG
ACAAAGTATTACAACTTGTTAATAGGCCAAATGATAACATATTCAATGGTGACATAGGAGTTATTGTTGGTATTTTTTGG
GCGAAAGAAAATGCCCTTAATAAAGATGTGCTTGTTGTGGATTTTGAAGGTAATGAAATTACATTTACGAAACAAGATAT
GATGGAATTAACACATGCATATTGTACATCAATCCATAAATCACAAGGTTCAGAATTTCCTATTGTTATCATGCCTATTG
TTAAACAGTATTTTAGAATGTTACAAAGACCGATATTATATACTGGTTTAACTAGAGCGAAAACCAGTTTAGTTTTACTT
GGTGATTCAGAAGCATTTGATATTGGATTGAAAACAAATGGTCAAGCGCGTTTAACACAATTATGTACATTGTTGAAAAA
TTATTTTAATTCAGAAGATGAAGACATGCTGGAAAATACAGCAACTAATGATACAGGAGCTTCGCAAACGACAATAGATG
ATCAAGTAGAAGCGCCAATGTCATCGAATGCTAGTGAAGAAGTTACGTCTGATTCAACAAAAACAGATACAAATGTATTA
ACGGAAGCTACAATGTTTAAAATTGACCCAATGATTAATATGGGAGAAATCACGCCGTATGACTTTATAGAACGTTGA
ATGTCAGACCCTACACTATTTGATTATTCAATGATCAAAGGTACTGTTGAAGCGATATTGTTTCAAAACAGTGATAATTT
TTATACAGTGCTTAAAGTAGATACTATTGAAACAAATGAAGACTTTGATACAATGCCAACTGTTGTAGGGTTTCTTCCGA
ATATTGTTGAAGGCGATGTCTACACATTTAAAGGGCAAGTTGTTGATCATCCACGTTATGGTAAACAATTAAAAGCAGAG
ACTTTTGAAAAAGAAATGCCACAAACGAAAGAAGCAATTATAAGTTATTTATCAAGTGATTTGTTTAAAGGTGTAGGTAA
AAAGACAGCTCAAAATATTGTTAATACATTAGGTGACAATGCGATAAACGATATATTAGATGACCATTCAGTTCTAGAAA
AAGTTTCGGGATTATCTAAAAAGAAACAGAAACAAATTGCAGAACAAATTTCAGCAAATCAAGAATCTGAAAAAATAATG
ATTCGTTTACATGATTTAGGGTTTGGTCCTAAACTTTCAATGGCAATTTATCAGTTTTATCTCGGTGATACACTGACTAT
TTTAGATCGAAATCCATATCAATTGATTTATGATATTAAAGGTATTGGTTTTAATAAAGCAGATCAACTTGCTAGAAATA
TTGGTATCGCTTATAACGATAATGAACGATTAAAAGCTGCGTTGCTCTATACGTTAGAAGAAGAATGTATTAAACAGGGA
CATACATATTTGCCTATCAATGTTGTTATAGATTTAACGGTTGATGTCTTAAATTATCAAGATGAAGAGGTCATCGAACC
TGAAAAATTAGACGAAATGTTGCAATACTTAAATGAGGAAAAACGACTAATTATTGACAATGAACAAGTTGCAATTCCAA
GTTTGTATTATTCTGAAATCAAAAGTGTTCAAAACTTATTCAGAATAAAGACGCATACAAATAAACTTACGGAAATTGAA
CAGTCAGATTTACAAATGCATATTGGCGAAATAGAGGATGCGAATCAAGTGAACTATGCAGCTTCACAAAAAGAAGCTTT
GCAAACGGCTATCAATTCTAAGGTGATGCTATTAACCGGTGGACCGGGAACAGGAAAGACGACAGTAATTAAAGGCATTG
TAGAATTATATGCTGAGATTCATGGCTTATCATTAGATTATGATGATTATGTCAATGATGATTATCCAGTTGTATTAGCA
GCGCCAACAGGAAGAGCGTCCAAGAGACTACAAGAGTCAACTGGATTAGAAGCTATGACGATTCATCGTTTAATAGGTTG
GAATCAAGACACAAAGCCAGAGGATATATTAGAAAATGAAATTAACGCACGACTCATAATCATTGATGAGATGTCTATGG
TAGATACTTGGTTGTTCCACCAATTTTTAAGTGCAGTTCCTTTAGATGCACAATTGATATTTGTAGGTGATGAGGACCAA
TTGCCTTCTGTAGGTCCTGGTCAAGTATTTAAAGATTTAATTGAATCGAAAGCTATACCACGAGTTAATCTGACTGAAGT
ATATCGTCAACAAGATGGTTCAAGCATTATAGAATTAGCACATCGAATGAAGTTGGGTCAGAAAATTGATATTACACAGC
GTTTTCATGATAGAAGTTTTATTAACTGTCAGGCAAACCAAATACCAACAGTTGTTGAGAAGGTAGTTACTAGTGCTGTT
AATAAAGGGTATACTATGGCTGATATTCAAGTGCTTGCACCAATGTATAAAGGAAATGCCGGTATTAAACGTTTAAATCA
AGTTTTACAAGATATTTTAAACCCTAAAAAGAAAGACACACGAGAAATTGAGTTTGGTGATGTAGTCTTTAGAAAAGGTG
ACAAAGTATTACAACTTGTTAATAGGCCAAATGATAACATATTCAATGGTGACATAGGAGTTATTGTTGGTATTTTTTGG
GCGAAAGAAAATGCCCTTAATAAAGATGTGCTTGTTGTGGATTTTGAAGGTAATGAAATTACATTTACGAAACAAGATAT
GATGGAATTAACACATGCATATTGTACATCAATCCATAAATCACAAGGTTCAGAATTTCCTATTGTTATCATGCCTATTG
TTAAACAGTATTTTAGAATGTTACAAAGACCGATATTATATACTGGTTTAACTAGAGCGAAAACCAGTTTAGTTTTACTT
GGTGATTCAGAAGCATTTGATATTGGATTGAAAACAAATGGTCAAGCGCGTTTAACACAATTATGTACATTGTTGAAAAA
TTATTTTAATTCAGAAGATGAAGACATGCTGGAAAATACAGCAACTAATGATACAGGAGCTTCGCAAACGACAATAGATG
ATCAAGTAGAAGCGCCAATGTCATCGAATGCTAGTGAAGAAGTTACGTCTGATTCAACAAAAACAGATACAAATGTATTA
ACGGAAGCTACAATGTTTAAAATTGACCCAATGATTAATATGGGAGAAATCACGCCGTATGACTTTATAGAACGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD2 | Bacillus subtilis subsp. subtilis str. 168 |
52.855 |
91.273 |
0.482 |