Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG820_RS12425 Genome accession   NZ_CP108118
Coordinates   2765034..2766251 (-) Length   405 a.a.
NCBI ID   WP_329314636.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00211     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2760034..2771251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG820_RS12405 (OG820_12400) - 2760311..2760649 (-) 339 WP_053691083.1 P-II family nitrogen regulator -
  OG820_RS12410 (OG820_12405) - 2760646..2761989 (-) 1344 WP_328763833.1 ammonium transporter -
  OG820_RS12415 (OG820_12410) - 2762372..2763877 (-) 1506 WP_371644956.1 hypothetical protein -
  OG820_RS12420 (OG820_12415) - 2764280..2764948 (+) 669 WP_327278776.1 bifunctional DNA primase/polymerase -
  OG820_RS12425 (OG820_12420) pilA 2765034..2766251 (-) 1218 WP_329314636.1 signal recognition particle-docking protein FtsY Machinery gene
  OG820_RS12430 (OG820_12425) - 2766399..2767895 (+) 1497 WP_327278774.1 cytosine permease -
  OG820_RS12435 (OG820_12430) - 2767959..2768945 (+) 987 WP_327278773.1 LLM class flavin-dependent oxidoreductase -
  OG820_RS12440 (OG820_12435) - 2768995..2770425 (-) 1431 WP_327278772.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 42471.62 Da        Isoelectric Point: 4.4045

>NTDB_id=654084 OG820_RS12425 WP_329314636.1 2765034..2766251(-) (pilA) [Streptomyces sp. NBC_00211]
MDILILAVVIALVAVGAISGLVVSSRKKKQLPPSAPSSTPTITAPPVEPQVGEDAVETAEEPRRTIEEVALPEAEAAAPE
APVVAEPEAPAAPEIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVVPTQELVDR
LRERVKVLGTRTPVELRTLLKEELLTLVGTDFDRAVKTESAADTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGA
ADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHG
PLDEILLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVD
ALIGD

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=654084 OG820_RS12425 WP_329314636.1 2765034..2766251(-) (pilA) [Streptomyces sp. NBC_00211]
ATGGACATCCTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGCGATCAGCGGGCTCGTGGTCAGTAGCCGCAA
GAAGAAGCAGCTGCCGCCCTCGGCGCCGTCGAGCACGCCGACCATCACTGCCCCGCCCGTCGAACCGCAGGTGGGGGAGG
ACGCCGTAGAGACGGCGGAAGAGCCCCGCCGCACCATCGAGGAGGTCGCCCTCCCCGAAGCGGAGGCTGCGGCTCCCGAG
GCGCCCGTCGTCGCCGAGCCCGAGGCGCCGGCAGCCCCCGAGATCGAGGTGCCCGAGCCCACCGCCGGCCGCCTGGTACG
GCTGCGCGCCCGCCTCGCCCGGTCGCAGAACTCGCTCGGCAAGGGGCTGCTCACGCTGCTCTCGCGCGAACACCTCGACG
AGGACACCTGGGAGGAGATCGAGGAGACCCTCCTGATCGCCGACGTCGGTGTCGTGCCGACGCAGGAGCTCGTCGACCGG
CTCCGCGAGCGGGTCAAGGTGCTCGGCACCCGCACCCCGGTCGAGCTGCGCACCCTGCTCAAGGAGGAGCTGCTGACCCT
GGTCGGCACCGACTTCGACCGCGCGGTCAAGACCGAGAGCGCCGCGGACACCCCGGGCGTCGTGATGGTCGTCGGTGTGA
ACGGCACCGGCAAGACCACCACCACCGGCAAGCTGGCCCGCGTGCTGGTCGCCGACGGCCGCTCCGTGGTGCTCGGCGCG
GCCGACACCTTCCGCGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGGGTCGGCGCGCGCACCGTACGCGGCCC
CGAGGGCGGCGACCCGGCCTCGATCGCCTACGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCCGACGTGGTGCTCATCG
ACACCGCCGGCCGCCTGCACACCAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCACGGC
CCGCTCGACGAGATCCTGCTCGTCCTGGACGCCACCACCGGGCAGAACGGTCTGACCCAGGCCCGCGTCTTCGCCGAGGT
CGTGGACATCACCGGCATCGTGCTGACCAAGCTCGACGGGACCGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAGC
TCGGCGTCCCGGTCAAGCTCATCGGCCTCGGCGAGGGCCCCGACGACCTCGCGCCCTTCGAGCCGGAGGCGTTCGTGGAC
GCCCTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(206-403)

SRP54-type protein, helical bundle domain (SRP54_N)

(119-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.723

100

0.417