Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MAK48_RS12500 Genome accession   NZ_CP091872
Coordinates   2445191..2445526 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus sp. Man122     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2440191..2450526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MAK48_RS12480 (MAK48_12480) gcvT 2440783..2441871 (-) 1089 WP_003230205.1 glycine cleavage system aminomethyltransferase GcvT -
  MAK48_RS12485 (MAK48_12485) - 2442313..2443986 (+) 1674 WP_003230203.1 SNF2-related protein -
  MAK48_RS12490 (MAK48_12490) - 2444007..2444801 (+) 795 WP_003230200.1 YqhG family protein -
  MAK48_RS12495 (MAK48_12495) sinI 2444984..2445157 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  MAK48_RS12500 (MAK48_12500) sinR 2445191..2445526 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  MAK48_RS12505 (MAK48_12505) tasA 2445619..2446404 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  MAK48_RS12510 (MAK48_12510) - 2446468..2447040 (-) 573 WP_003230181.1 signal peptidase I -
  MAK48_RS12515 (MAK48_12515) tapA 2447024..2447785 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  MAK48_RS12520 (MAK48_12520) - 2448057..2448383 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MAK48_RS12525 (MAK48_12525) - 2448425..2448604 (-) 180 WP_003230176.1 YqzE family protein -
  MAK48_RS12530 (MAK48_12530) comGG 2448675..2449049 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  MAK48_RS12535 (MAK48_12535) comGF 2449050..2449433 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  MAK48_RS12540 (MAK48_12540) comGE 2449459..2449806 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  MAK48_RS12545 (MAK48_12545) comGD 2449790..2450221 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  MAK48_RS12550 (MAK48_12550) comGC 2450211..2450507 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=654032 MAK48_RS12500 WP_003226345.1 2445191..2445526(+) (sinR) [Bacillus sp. Man122]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=654032 MAK48_RS12500 WP_003226345.1 2445191..2445526(+) (sinR) [Bacillus sp. Man122]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1