Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OHA17_RS25745 Genome accession   NZ_CP108115
Coordinates   5612707..5614929 (+) Length   740 a.a.
NCBI ID   WP_406508559.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00212     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5607707..5619929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA17_RS25725 (OHA17_25665) - 5608795..5609838 (+) 1044 WP_406508555.1 LacI family DNA-binding transcriptional regulator -
  OHA17_RS25730 (OHA17_25670) - 5610147..5611286 (-) 1140 WP_406508556.1 CapA family protein -
  OHA17_RS25735 (OHA17_25675) - 5611544..5611777 (+) 234 WP_406508557.1 hypothetical protein -
  OHA17_RS25740 (OHA17_25680) - 5611861..5612406 (-) 546 WP_406508558.1 DUF937 domain-containing protein -
  OHA17_RS25745 (OHA17_25685) recD/recD2/recDB 5612707..5614929 (+) 2223 WP_406508559.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHA17_RS25750 (OHA17_25690) - 5615110..5616408 (+) 1299 WP_406508560.1 citrate synthase -
  OHA17_RS25755 (OHA17_25695) - 5616797..5619334 (-) 2538 WP_406510813.1 heavy metal translocating P-type ATPase -
  OHA17_RS25760 (OHA17_25700) - 5619462..5619770 (-) 309 WP_406508561.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79216.74 Da        Isoelectric Point: 7.1462

>NTDB_id=654032 OHA17_RS25745 WP_406508559.1 5612707..5614929(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00212]
MSSLTGAAVVEGVLERITYANEESGYTVARVDTGRGGNDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTV
LPATIQGIRRYLGSGLIKGIGPVFADRITQHFGADTLDIIEQEPKRLIEVPGLGPKRTKKIAAAWEEQKAIKEVMVFLQG
VGVSTSIAVRIYKKYGDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPE
ERLIADSVKLLQVDTGLVIECLAELIAEEGAVKEKVPGPDGGEPVAAVYLVPFHRAELSLAAQVGRLLRTGEDRMPGFAG
VDWGKALGWLAGRTGAELAPEQQEAVKLALTSKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAKRLAELT
GAEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLMVGDVDQLPSVGAGEVLRDLL
AEGGPVPSVRLTRIFRQAQESGVVTNAHRINSGTQPITSGLDDFFLFVEDETEDAGRLTVDVAARRIPAKFGLDPRRDIQ
VLAPMHRGPAGAGTLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGVVTSLNLDEQHLTV
LTDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRT
VSAGRRFTALAHRLSGGTLV

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=654032 OHA17_RS25745 WP_406508559.1 5612707..5614929(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00212]
ATGTCGAGTCTCACGGGTGCGGCGGTTGTGGAGGGGGTCCTTGAGCGGATCACGTACGCCAATGAGGAGAGCGGATACAC
CGTCGCGCGCGTCGACACCGGCCGGGGCGGCAACGACCTCCTGACGGTGGTCGGCTCGCTGCTCGGCGCGCAGCCGGGGG
AGTCGCTGCGGATGGAGGGCCGCTGGGGGTCCCACCCCCAGTACGGCAAGCAGTTCACCGTCGAGAACTACACGACCGTC
CTGCCCGCCACCATCCAGGGCATCCGCCGCTACCTCGGCTCCGGCCTGATCAAGGGCATCGGCCCGGTCTTCGCCGACCG
CATCACCCAGCACTTCGGCGCCGACACCCTCGACATCATCGAGCAGGAGCCCAAGCGACTGATCGAGGTCCCCGGCCTCG
GCCCCAAGCGGACGAAGAAGATCGCGGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGGGG
GTCGGCGTCTCCACCTCCATCGCCGTCCGCATTTACAAGAAGTACGGGGACGCCTCGATCTCCGTCGTCAAGAACCAGCC
CTACCGGCTCGCCGCCGACGTCTGGGGCATCGGGTTCCTCACCGCCGACCGGATCGCCCAGGCCGTCGGCATCCCGCACG
ACAGCCCGGAGCGCGTGAAGGCGGGCTTGCAGTACGCGCTGTCCCAGTCCACCGACCAGGGGCACTGCTTCCTCCCGGAG
GAGCGCCTGATCGCCGACTCCGTGAAGCTGCTCCAGGTCGACACCGGCCTTGTCATCGAGTGCCTGGCCGAGCTCATCGC
CGAAGAGGGCGCCGTGAAGGAGAAGGTGCCGGGGCCGGACGGGGGCGAGCCCGTCGCCGCCGTGTACCTCGTGCCGTTCC
ACCGCGCCGAGCTCTCGCTGGCCGCCCAGGTGGGGCGCCTGCTGCGGACCGGCGAGGACCGGATGCCGGGGTTCGCCGGG
GTCGACTGGGGCAAGGCGCTCGGCTGGCTCGCCGGGCGCACCGGGGCCGAGCTCGCGCCGGAGCAGCAGGAGGCCGTCAA
ACTGGCCCTGACCAGCAAGGTCGCGGTCCTCACCGGCGGGCCGGGCTGCGGCAAGTCCTTCACGGTCCGCTCGGTCGTGG
AGCTCGCCCGCGCCAAGAAGGCCAAGGTGGTGCTCGCCGCGCCGACCGGGCGGGCCGCCAAGCGGCTGGCCGAGCTGACC
GGCGCCGAAGCCTCCACCGTGCACCGCCTGCTCGAACTGAAGCCGGGCGGCGACGCGGCGTACGACAAGGACCGGCCCCT
TGACGCGGACCTGGTCGTCGTCGACGAGGCCTCCATGCTCGACCTGCTGCTCGCCAACAAGCTCGTGAAGGCGGTGGCAC
CTGGGGCCCACCTCTTGATGGTGGGCGACGTCGACCAGCTGCCGTCGGTCGGCGCCGGGGAGGTGCTGCGCGATCTGCTC
GCCGAGGGCGGTCCCGTCCCCAGCGTGCGGCTGACCCGGATCTTCCGGCAGGCCCAGGAGTCCGGCGTCGTCACCAACGC
CCACCGCATCAACTCCGGTACGCAGCCCATCACTTCGGGCCTGGACGACTTCTTCCTCTTCGTCGAGGACGAGACCGAGG
ACGCGGGCCGCCTCACCGTCGACGTCGCGGCCCGGCGCATCCCGGCGAAGTTCGGGCTCGACCCGCGCCGCGACATCCAG
GTGCTCGCCCCGATGCACCGCGGCCCGGCCGGCGCCGGCACCCTCAACGGCCTGCTCCAGCAGGCGATCACGCCCGCCCG
GCCCGACCTGCCGGAGAAAAGGTTCGGTGGAAGGGTGTTCCGCGTCGGCGACAAGGTCACCCAGATTCGCAACAATTACG
AGAAGGGCAAGAACGGCGTCTTCAACGGCACCGTCGGCGTGGTCACCTCGCTCAACCTCGACGAGCAGCACCTGACGGTC
CTGACGGACGAGGACGAGGAGGTGCCGTACGACTTCGACGAGCTGGACGAGCTGGCCCACGCCTACGCCGTGACGATCCA
CCGCTCCCAGGGCAGCGAGTACCCGGCCGTCGTCATCCCGGTCACCACCGGCGCCTGGATGATGCTCCAGCGCAATCTGC
TCTACACGGCGGTGACGCGCGCCAAGAAGCTCGTCGTCCTGGTGGGGTCCCGCAAGGCGATCGGCCAGGCGGTGCGTACC
GTTTCCGCAGGCAGACGCTTTACCGCACTCGCTCACCGGCTGTCAGGGGGCACTTTGGTGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-237)

AAA domain (AAA_30)

(337-516)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-640)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(660-708)

Helix-hairpin-helix domain (HHH_5)

(97-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.117

100

0.364