Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OHA30_RS10890 Genome accession   NZ_CP108109
Coordinates   2613551..2615770 (-) Length   739 a.a.
NCBI ID   WP_328913617.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00223     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2608551..2620770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA30_RS10870 (OHA30_10860) - 2609171..2609863 (+) 693 WP_328913613.1 TetR/AcrR family transcriptional regulator -
  OHA30_RS10875 (OHA30_10865) - 2609916..2610698 (-) 783 WP_328913614.1 VTT domain-containing protein -
  OHA30_RS10880 (OHA30_10870) - 2610932..2611681 (-) 750 WP_328913615.1 SDR family oxidoreductase -
  OHA30_RS10885 (OHA30_10875) - 2612137..2613426 (-) 1290 WP_328913616.1 citrate synthase -
  OHA30_RS10890 (OHA30_10880) recD/recD2/recDB 2613551..2615770 (-) 2220 WP_328913617.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHA30_RS10895 (OHA30_10885) - 2616073..2616933 (-) 861 WP_328917818.1 sugar phosphate isomerase/epimerase family protein -
  OHA30_RS10900 (OHA30_10890) - 2616975..2618129 (-) 1155 WP_328913618.1 dihydrodipicolinate synthase family protein -
  OHA30_RS10905 (OHA30_10895) - 2618126..2619277 (-) 1152 WP_328913619.1 Gfo/Idh/MocA family oxidoreductase -
  OHA30_RS10910 (OHA30_10900) - 2619551..2620639 (+) 1089 WP_328913620.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 79572.98 Da        Isoelectric Point: 7.1112

>NTDB_id=653917 OHA30_RS10890 WP_328913617.1 2613551..2615770(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00223]
MGETGLAVLEGVLERITYANEDNGYTVARVDTGRGSEDLLTVVGALLGAQPGESLRMHGRWGSHPQYGKQFTVENYTTVL
PATIQGIRRYLGSGLIKGIGPRIAERIVEHFGTSTLDVIESEPKRLVEVPGLGPKRTKLIAAAWEEQKAIKEVMIFLQGV
GVSTSIAVRIYKSYGDASISVVKNQPYRLAAEVWGIGFLTADRLAQAVGIPHDSPERVKAGLQYALSQATDSGNCFLPQE
RLISDSVKLLQVDTGLVIECLGELADEEGVVRENVPAPDGDGEPVKAVYLVPFHRAEISLAAQLLRLLRGPEDRLPAFRD
VDWDKALTWLAGTTGTDLAPEQQQAVRLALTEKVAVLTGGPGCGKSFTVRSVVALARAKKAKVVLAAPTGRAAKRLAELT
GAEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLAKAVPPGAHLLFVGDVDQLPSVGAGEVLRDLL
APGSPVPAVRLTRIFRQAQQSGVVTNAHRINSGVPPITQGLPDFFLFAEEDSEEAGRLTVDVVARRIPARFGLDPRRDVQ
VLAPMHRGPAGAGVLNGLLQQAVTPARPDLPERRFGGRTFRVGDKVTQIRNNYDKGANGVFNGTVGVVTALDTVEQRLTV
RTDEDEEVGYDFDELDELTHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRRAIGQAVRT
VSAGRRFTALDHRLSQGAK

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=653917 OHA30_RS10890 WP_328913617.1 2613551..2615770(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00223]
ATGGGGGAGACGGGACTTGCCGTGCTGGAAGGCGTCCTGGAACGGATCACGTATGCCAACGAGGACAACGGCTACACGGT
CGCGCGGGTCGACACCGGCCGCGGCTCGGAGGACCTGCTGACGGTCGTCGGCGCGCTGCTCGGCGCTCAGCCGGGTGAAT
CCCTGCGGATGCACGGCCGTTGGGGATCGCACCCGCAGTACGGCAAGCAGTTCACGGTGGAGAACTACACGACTGTCCTG
CCGGCCACGATCCAGGGGATCCGCCGCTACCTGGGATCGGGGCTGATCAAGGGCATCGGCCCGCGGATCGCCGAGCGCAT
CGTCGAGCACTTCGGCACCAGCACGCTGGACGTCATCGAGAGCGAGCCCAAACGGCTTGTCGAGGTGCCCGGCCTCGGCC
CCAAGCGGACAAAGCTGATAGCCGCCGCGTGGGAGGAACAAAAAGCGATCAAGGAGGTGATGATCTTTCTGCAGGGAGTG
GGCGTGTCCACGTCCATCGCCGTGCGGATCTACAAGAGTTACGGGGACGCCTCGATCTCCGTGGTGAAGAACCAGCCGTA
CCGGCTGGCCGCCGAGGTCTGGGGGATCGGCTTCCTGACCGCGGACCGGCTGGCCCAGGCGGTCGGCATACCGCACGACA
GCCCGGAGCGGGTCAAGGCGGGGCTCCAGTACGCCCTTTCGCAGGCCACCGACAGCGGCAACTGCTTCCTGCCCCAGGAA
CGGCTCATCTCCGACTCGGTGAAACTCCTTCAGGTGGACACCGGCCTGGTCATCGAGTGTCTGGGCGAACTCGCCGACGA
GGAAGGCGTCGTCCGCGAGAACGTACCGGCGCCCGACGGCGACGGCGAGCCCGTGAAGGCCGTCTACCTGGTGCCGTTCC
ACCGCGCGGAGATCTCGCTCGCCGCCCAACTGCTGCGCCTGCTGCGTGGCCCGGAGGATCGGCTGCCCGCCTTCCGGGAC
GTGGACTGGGACAAGGCGCTGACCTGGCTCGCGGGCACCACGGGAACCGACCTCGCGCCCGAGCAGCAGCAGGCGGTACG
GCTGGCGCTCACCGAGAAGGTCGCCGTGCTCACCGGCGGACCGGGCTGCGGCAAGTCCTTCACCGTGCGTTCGGTGGTCG
CCCTCGCCCGGGCGAAGAAGGCCAAGGTGGTGCTCGCCGCTCCGACCGGCCGCGCGGCCAAGCGGCTGGCCGAGCTGACC
GGCGCCGAAGCGTCCACCGTGCACCGGCTGCTGGAGCTCAAGCCGGGCGGTGACGCGGCGTACGACAAGGACCGGCCGCT
GGACGCGGATCTGGTGGTGGTCGACGAGGCGTCAATGCTCGACCTGCTGCTCGCGAACAAGCTGGCCAAGGCGGTGCCAC
CGGGCGCCCATCTGCTGTTCGTCGGGGACGTCGACCAGCTGCCGAGCGTGGGCGCGGGTGAGGTGCTGCGGGACCTGCTC
GCACCGGGCAGCCCGGTCCCCGCGGTACGGCTCACCCGGATCTTCCGGCAGGCCCAGCAGTCCGGCGTGGTGACCAACGC
GCACCGGATCAACTCCGGCGTGCCGCCCATCACCCAGGGGCTGCCCGACTTCTTCCTCTTCGCCGAGGAGGACTCGGAGG
AGGCGGGTCGGCTCACGGTGGACGTGGTGGCCCGGCGGATTCCGGCCAGGTTCGGTCTCGACCCGCGGCGGGACGTGCAG
GTCCTGGCTCCGATGCACCGGGGTCCGGCCGGGGCCGGAGTGCTGAACGGGCTGCTTCAGCAGGCCGTCACCCCCGCACG
CCCCGATCTGCCCGAGCGCAGGTTCGGCGGCCGTACCTTCCGGGTGGGGGACAAGGTCACCCAGATCAGAAACAACTATG
ACAAGGGCGCCAACGGCGTCTTCAACGGCACGGTCGGCGTGGTCACCGCACTCGACACCGTCGAGCAGCGGCTGACCGTG
CGCACCGACGAGGACGAGGAGGTCGGCTACGACTTCGACGAGCTGGACGAGCTGACCCATGCCTACGCGGTGACGATCCA
CCGTTCGCAGGGCAGCGAGTATCCGGCGGTAGTGATCCCCGTCACCACGGGCGCCTGGATGATGCTCCAGCGCAACCTGC
TCTACACCGCTGTCACCAGGGCAAAGAAGCTGGTCGTACTGGTCGGCTCGCGCCGTGCGATCGGGCAGGCGGTACGCACG
GTTTCCGCCGGAAGACGCTTCACGGCTCTCGACCATCGGCTGTCCCAGGGCGCAAAATAG

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-641)

AAA domain (AAA_30)

(338-516)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(660-708)

Helix-hairpin-helix domain (HHH_5)

(96-144)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.649

100

0.368