Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG230_RS12450 Genome accession   NZ_CP108101
Coordinates   2862144..2864381 (-) Length   745 a.a.
NCBI ID   WP_328910251.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2857144..2869381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS12435 (OG230_12435) - 2857314..2857622 (+) 309 WP_328910248.1 heavy-metal-associated domain-containing protein -
  OG230_RS12440 (OG230_12440) - 2857736..2860069 (+) 2334 WP_328910249.1 heavy metal translocating P-type ATPase -
  OG230_RS12445 (OG230_12445) - 2860656..2861945 (-) 1290 WP_328910250.1 citrate synthase -
  OG230_RS12450 (OG230_12450) recD/recD2/recDB 2862144..2864381 (-) 2238 WP_328910251.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG230_RS12455 (OG230_12455) - 2864688..2865518 (-) 831 WP_328910252.1 sugar phosphate isomerase/epimerase family protein -
  OG230_RS12460 (OG230_12460) - 2865515..2866657 (-) 1143 WP_328910253.1 dihydrodipicolinate synthase family protein -
  OG230_RS12465 (OG230_12465) - 2866654..2867805 (-) 1152 WP_328910254.1 Gfo/Idh/MocA family oxidoreductase -
  OG230_RS12470 (OG230_12470) - 2867917..2869029 (+) 1113 WP_328910255.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 80122.71 Da        Isoelectric Point: 6.5906

>NTDB_id=653677 OG230_RS12450 WP_328910251.1 2862144..2864381(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00234]
MSNTAVLEGVLERITYANEENGYTVARVDTGRGANDLLTVVGSLLGAQPGESLRMEGRWGSHPQFGKQFTVENYTTILPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEQQPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQSVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADKIAQAVGIPHDSPERVKAGLQYALSQSSDQGHCYLPEERL
IADGVKLLQVDTGLVIECLAELAADPEGVVREKVPSPEGGDGEPVTAVYLVPFHRAEISLAAQVRRLLGTPEDRMPAFQD
VDWDKALGWLATRTGATLAPEQEAAVRLALSRKVAVLTGGPGCGKSFTVRSVVELARAKQAKVVLAAPTGRAAKRLSELT
GAEASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLL
AEGGPVPAVRLTTIFRQAQQSGVVTNAHRINSGVPPLTQGLADFFLFVEDETEQAGLLAVDVAARRIPAKFGLDPRRDVQ
VLAPMHRGPAGAGALNGLLQQVITPARPDLPEKRSGGRVFRVGDKVTQVRNNYDKGENGVFNGTVGVVTTLDVDEQKLTV
RTDEDEEVVYDFDELDELAHAYAMTIHRSQGSEYPAVVIPVTNSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRT
VSAGRRCTGLDFRLRGGLGGDFAQK

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=653677 OG230_RS12450 WP_328910251.1 2862144..2864381(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00234]
ATGTCCAACACGGCCGTCCTCGAAGGGGTCCTGGAACGGATCACCTACGCCAACGAGGAGAACGGGTACACGGTCGCCCG
CGTCGACACCGGACGCGGCGCCAACGATCTCCTCACGGTGGTCGGCTCGCTGCTCGGTGCGCAGCCCGGCGAGTCCCTTC
GGATGGAGGGTCGTTGGGGCTCCCATCCGCAGTTCGGCAAGCAGTTCACCGTCGAGAACTACACGACGATCCTCCCCGCC
ACCATCCAGGGCATCCGCCGCTATCTCGGCTCCGGACTGATCAAGGGCATCGGCCCCGTCATGGCCGACCGGATCACCAC
GCACTTCGGCGTCGACACCCTCGACATCATCGAGCAGCAGCCGAAGCGGCTCGTCGAGGTGCCCGGCCTCGGCCCGAAGC
GGACGAAGATGATCGCGGCGGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATGGTCTTCCTCCAGAGCGTCGGCGTC
TCCACCTCCATCGCCGTCCGTATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCGG
AGCGGGTCAAGGCGGGTCTCCAGTACGCGCTGTCGCAGTCCTCCGACCAGGGACACTGCTACCTCCCCGAGGAGCGCCTG
ATCGCCGACGGGGTGAAGCTGCTCCAGGTCGATACGGGCCTGGTCATCGAGTGCCTCGCCGAACTGGCGGCGGACCCCGA
GGGTGTCGTACGGGAGAAGGTGCCGTCCCCCGAGGGAGGGGACGGGGAGCCGGTCACCGCCGTCTATCTCGTGCCCTTCC
ACCGCGCCGAGATCTCCCTCGCCGCACAGGTGCGCCGCCTGCTGGGCACCCCGGAGGACCGGATGCCGGCCTTCCAGGAC
GTGGACTGGGACAAGGCGCTCGGCTGGCTCGCCACGCGTACGGGGGCGACGCTGGCACCCGAGCAGGAGGCCGCCGTCCG
GCTCGCCCTCAGCCGGAAGGTCGCCGTGCTGACGGGCGGGCCGGGCTGCGGCAAGTCCTTCACCGTCCGCTCCGTCGTCG
AGCTGGCCCGCGCCAAGCAGGCGAAGGTCGTGCTGGCCGCGCCCACCGGGCGGGCCGCCAAGCGGCTCTCCGAACTGACC
GGGGCCGAGGCGTCCACCGTGCACCGGCTGCTCGAACTGAAGCCGGGCGGGGACGCGGCGTACGACAGGGACCGGCCGCT
CGACGCCGATCTGGTCGTCGTCGACGAGGCGTCCATGCTCGATCTGCTGCTCGCCAACAAGCTCGTGAAGGCGGTGGCAC
CCGGTGCCCACCTCCTGCTGGTGGGTGACGTCGACCAGCTTCCCTCGGTCGGCGCGGGGGAGGTGCTGCGCGATCTGCTC
GCCGAGGGCGGACCGGTTCCGGCGGTGAGGCTGACGACCATCTTCCGGCAGGCCCAGCAGTCCGGAGTCGTCACCAACGC
CCACCGCATCAACTCCGGAGTTCCCCCGCTCACCCAGGGCCTGGCCGACTTCTTCCTCTTCGTGGAGGACGAGACGGAGC
AGGCGGGCCTGCTCGCCGTGGATGTCGCGGCCCGTCGCATCCCGGCGAAGTTCGGCCTCGACCCCCGCCGTGACGTGCAG
GTTCTCGCTCCGATGCACCGGGGCCCGGCCGGCGCGGGCGCGCTGAACGGGCTGCTCCAGCAGGTCATCACCCCCGCCCG
CCCGGACCTGCCGGAGAAGCGGTCCGGAGGCCGGGTCTTCCGCGTCGGCGACAAGGTGACCCAGGTCCGCAACAACTACG
ACAAGGGTGAGAACGGCGTCTTCAACGGGACCGTCGGCGTGGTCACCACCCTGGACGTGGACGAGCAGAAGCTGACCGTC
CGGACGGACGAGGACGAAGAGGTCGTCTACGACTTCGACGAGCTCGACGAGCTGGCCCACGCGTACGCCATGACCATCCA
TCGCTCCCAGGGCAGCGAGTACCCGGCCGTCGTCATCCCGGTCACCAACAGCGCCTGGATGATGCTCCAGCGGAACCTGC
TCTACACGGCCGTCACGCGCGCCAAGAAGCTCGTCGTACTCGTCGGGTCGCGCAAGGCGATAGGCCAGGCCGTACGCACG
GTTTCCGCAGGCAGACGCTGTACGGGACTGGATTTTCGGCTGCGCGGAGGGCTCGGCGGAGACTTCGCACAAAAATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(337-516)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(660-708)

Helix-hairpin-helix domain (HHH_5)

(94-143)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-641)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.425

100

0.364