Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG230_RS11285 Genome accession   NZ_CP108101
Coordinates   2581107..2582840 (+) Length   577 a.a.
NCBI ID   WP_328910038.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2576107..2587840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS11250 (OG230_11250) - 2576243..2577466 (-) 1224 WP_328910035.1 saccharopine dehydrogenase C-terminal domain-containing protein -
  OG230_RS11255 (OG230_11255) - 2577594..2578379 (+) 786 WP_328910036.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
  OG230_RS11275 (OG230_11275) - 2579075..2579389 (+) 315 WP_328911369.1 YtxH domain-containing protein -
  OG230_RS11280 (OG230_11280) - 2579536..2580981 (+) 1446 WP_328910037.1 FGGY family carbohydrate kinase -
  OG230_RS11285 (OG230_11285) rcrP 2581107..2582840 (+) 1734 WP_328910038.1 ABC transporter ATP-binding protein Regulator
  OG230_RS11290 (OG230_11290) - 2582840..2584774 (+) 1935 WP_328910039.1 ABC transporter ATP-binding protein -
  OG230_RS11295 (OG230_11295) - 2584834..2586012 (-) 1179 WP_328911370.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62401.43 Da        Isoelectric Point: 5.2413

>NTDB_id=653673 OG230_RS11285 WP_328910038.1 2581107..2582840(+) (rcrP) [Streptomyces sp. NBC_00234]
MLIKILRTHLGPYRKPIALLVLLQLLQTCASLYLPSLNADIIDNGVVTGDTGYILEFGGIMIAVSIVQVVCNVGAVYYGA
RTASALGRDVRAAVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPVLGISVSLIVKRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDAYEEKRFRGANTDLTDVSLSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PLAPVTELRSHGHLEVRGAEFRYPGAEEPVLREVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGAVLVDGVDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEGLENGLNAPIAQGGTNVSGGQRQRL
AIARTLVQQPEIYLFDDSFSALDYATDAALRGALARETAGATVLIVAQRVSTIRDADRILVLDEGRVVGTGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=653673 OG230_RS11285 WP_328910038.1 2581107..2582840(+) (rcrP) [Streptomyces sp. NBC_00234]
GTGCTCATAAAAATCCTGCGGACCCATCTCGGCCCGTACCGAAAACCCATTGCCCTGCTGGTCCTTCTCCAGCTGCTGCA
GACCTGCGCCAGCCTCTACCTGCCCAGCCTCAACGCAGACATCATTGACAACGGTGTCGTGACGGGCGACACGGGCTACA
TCCTGGAGTTCGGCGGCATCATGATCGCCGTCAGCATCGTCCAGGTCGTGTGCAACGTCGGGGCGGTCTACTACGGCGCG
CGCACCGCGTCCGCGCTCGGACGCGATGTCCGTGCCGCGGTCTTCGACCGGGTGCAGTCCTTCTCCGCGCGGGAACTCGG
CCGCTTCGGCGCACCCTCGCTGATCACCCGGACGACCAATGACGTGCAGCAGGTCCAGATGCTGGTCCTGATGGCGTTCA
CCTTGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCATCGTCATGGCGCTCGGGCAGGACGTGCCGCTCTCCGCCGTG
CTCCTCGCCGTGGTGCCGGTCCTCGGGATCTCGGTGAGCCTCATCGTGAAGAGGATGCGCCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGGGACG
CGTACGAGGAGAAGCGCTTCCGCGGGGCCAACACCGATCTGACGGACGTGTCCCTGTCCACCGGCCGGCTCATGGCGCTC
ATGTTCCCGACCGTGATGACCGTGGTGAACGTGTCGTCCATCGCGGTGGTCTGGTTCGGTGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGAGACCGATTCGAGCGTGGTGCCG
CCTCTGGCCCCCGTCACGGAGCTGCGCAGTCACGGCCATCTGGAGGTACGGGGAGCGGAGTTCCGCTACCCGGGCGCCGA
GGAGCCCGTGCTGCGCGAGGTGGACCTGGTGGCGCGGCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGCGACGGACGGCGCGGTGCTCGTCGACGGCGTCGACGTGCGC
ACGCTCGACCCGGTGCTGCTCGCGAAGACCGTGAGCCTGGTGCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGGAATCCGGACGCGACCGACGAGGAGCTCTGGCACGCACTGGAGGTCGCTCAGGCCAAGGAGTTCG
TGGAGGGGCTGGAGAACGGCCTGAACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGTGGTCAGCGGCAGCGTCTG
GCGATCGCCAGGACGCTGGTGCAGCAGCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTCGACTACGCCACGGA
CGCCGCGCTGCGCGGGGCGCTCGCGCGGGAGACGGCCGGGGCGACGGTGCTGATCGTGGCCCAGCGAGTGTCCACCATCC
GTGACGCCGACCGGATTCTGGTGCTGGACGAGGGCCGGGTCGTCGGGACCGGCACCCATCACGAGCTGATGGACGGCAAC
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.426

97.747

0.395