Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG764_RS23325 Genome accession   NZ_CP108095
Coordinates   5295793..5298021 (+) Length   742 a.a.
NCBI ID   WP_328970365.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5290793..5303021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS23300 (OG764_23295) - 5290872..5291822 (-) 951 WP_328970361.1 LysR family transcriptional regulator -
  OG764_RS23305 (OG764_23300) - 5291931..5292881 (+) 951 WP_328970362.1 EamA family transporter -
  OG764_RS23310 (OG764_23305) - 5292835..5293320 (-) 486 Protein_4585 GNAT family N-acetyltransferase -
  OG764_RS23315 (OG764_23310) - 5293404..5294471 (+) 1068 WP_328970363.1 hypothetical protein -
  OG764_RS23320 (OG764_23315) - 5295004..5295537 (-) 534 WP_328970364.1 DUF937 domain-containing protein -
  OG764_RS23325 (OG764_23320) recD/recD2/recDB 5295793..5298021 (+) 2229 WP_328970365.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG764_RS23330 (OG764_23325) - 5298189..5299478 (+) 1290 WP_328970366.1 citrate synthase -
  OG764_RS23335 (OG764_23330) - 5299885..5302209 (-) 2325 WP_328970367.1 heavy metal translocating P-type ATPase -
  OG764_RS23340 (OG764_23335) - 5302300..5302608 (-) 309 WP_328970368.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 79844.42 Da        Isoelectric Point: 7.2878

>NTDB_id=653541 OG764_RS23325 WP_328970365.1 5295793..5298021(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00239]
MSNLAVVEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGALLGAQPGESLRMEGRWASHPQYGKQFTVENYTTLLPA
TVQGIRRYLGSGLIKGIGPRIADRITDHFGIDTLDVIEQEPKRLIEVPGLGPKRTRMIGAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEDRL
IADGVKLLQVDTGLVIDCLAELAGEDEGVVREQVPAPDGGPPLTAVYLVPFHRAELSLAGQVRRLLGAEEDRMSGFRDVD
WDKALTWLAGRTGAQLAPEQRDAVRLALTSKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLAELTGA
EASTVHRLLELKPGGDAAYDRDRPLEADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAD
GGPVPAVRLTRIFRQAQQSGVVTNAHRINTGLPPLTDGLPDFFLFAEEDTEAAGRLAVDVAARRIPAKFGLDPRRDIQVL
APMHRGPAGAGNLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGANGVFNGTVGVVTALDPDEQRLTVRT
DEDEEVTYEFDELDELAHAYAVTIHRSQGSEYPAVVIPITTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKALGQAVRTVS
AGRRYTAVAPRLSGRIPVGNFT

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=653541 OG764_RS23325 WP_328970365.1 5295793..5298021(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00239]
ATGTCCAATCTGGCAGTGGTCGAAGGGGTGCTCGAGCGCATCACGTACGCCAACGAGGAGAACGGCTACACCGTCGCCCG
GGTCGACACGGGGCGCGGGGCCGGCGATCTCCTCACGGTGGTCGGTGCCCTGCTCGGCGCGCAACCCGGTGAATCGCTGC
GGATGGAGGGCCGCTGGGCCTCCCATCCGCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACGACCCTGCTCCCGGCC
ACCGTCCAGGGCATCCGCCGCTACCTCGGCTCCGGCCTGATCAAGGGCATCGGGCCGCGGATCGCGGACCGGATCACCGA
CCACTTCGGGATCGACACGCTCGACGTGATCGAGCAGGAGCCGAAGCGGCTGATCGAGGTGCCCGGGCTCGGCCCCAAGC
GGACCCGGATGATCGGGGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGGGTGTCGGCGTC
TCCACCTCCATCGCGGTCCGCATCTACAAGAAGTACGGGGACGCCTCCATCTCCGTGGTGAAGAACCAGCCCTACCGGCT
CGCCGCCGACGTGTGGGGCATCGGCTTCCTGACCGCCGACCGGATCGCCCAGGCCGTCGGGATCCCGCACGACAGCCCCG
AGCGGGTGAAGGCCGGACTCCAGTACGCGCTGTCCCAGTCCACCGACCAGGGGCACTGCTTCCTGCCCGAGGACCGGCTG
ATCGCCGACGGGGTCAAGCTGCTCCAGGTGGACACCGGGCTGGTCATCGACTGCCTGGCCGAACTGGCGGGCGAGGACGA
GGGCGTGGTCCGGGAGCAGGTCCCCGCGCCGGACGGCGGGCCGCCGCTCACCGCGGTCTACCTGGTGCCCTTCCACCGGG
CGGAGCTCTCCCTGGCCGGCCAGGTGCGGCGGCTGCTGGGAGCCGAAGAAGACCGGATGTCCGGCTTCCGGGACGTCGAC
TGGGACAAGGCGCTGACCTGGCTGGCGGGGCGCACCGGCGCCCAGCTCGCCCCCGAGCAGCGCGACGCCGTCCGGCTGGC
CCTGACCAGCAAGGTCGCCGTGCTCACCGGCGGGCCGGGCTGCGGCAAGTCGTTCACGGTGCGCTCGATCGTGGAGCTGG
CCCGGGCGAAGAAGGCCAAGGTGGTGCTCGCCGCGCCCACCGGCCGGGCCGCCAAGCGGCTGGCCGAGCTGACCGGGGCC
GAGGCCTCCACCGTGCACCGGCTGCTGGAGCTCAAGCCGGGCGGGGACGCGGCGTACGACCGGGACCGGCCGCTGGAGGC
CGACCTGGTCGTGGTCGACGAGGCCTCGATGCTGGACCTGCTGCTGGCGAACAAGCTGGTCAAGGCGGTGGCGCCGGGGG
CCCACCTGCTGCTCGTCGGGGACGTGGACCAGCTGCCCTCGGTGGGCGCCGGCGAGGTGCTCCGCGACCTGCTGGCCGAC
GGCGGCCCGGTGCCCGCCGTCCGGCTGACCCGGATCTTCCGGCAGGCCCAGCAGTCCGGTGTGGTCACCAACGCCCACCG
GATCAACACCGGGCTGCCGCCGCTCACCGACGGACTGCCGGACTTCTTCCTCTTCGCCGAGGAGGACACCGAGGCGGCGG
GCCGGCTCGCCGTGGACGTGGCCGCCCGCCGGATTCCGGCCAAGTTCGGGCTCGACCCGCGACGGGACATCCAGGTGCTC
GCGCCCATGCACCGCGGCCCGGCCGGCGCCGGGAACCTGAACGGGCTGCTCCAGCAGGCCATCACCCCGGCCCGGCCGGA
CCTCCCCGAGAAGCGGTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGAGAAGG
GTGCCAACGGGGTCTTCAACGGCACGGTCGGCGTAGTGACCGCCCTGGACCCCGACGAGCAGCGGTTGACGGTGCGCACG
GACGAAGACGAGGAGGTCACGTACGAGTTCGACGAGCTGGACGAGCTCGCGCACGCCTATGCCGTGACGATTCACCGTTC
CCAGGGGAGTGAATACCCGGCGGTGGTGATCCCGATCACCACCGGAGCTTGGATGATGCTCCAGCGGAACCTTCTCTACA
CCGCTGTCACCAGGGCCAAGAAGCTGGTCGTCCTCGTCGGCTCGCGCAAGGCCCTGGGGCAGGCGGTGCGGACGGTTTCC
GCAGGCAGGAGGTACACGGCCGTGGCCCCTAGGCTGTCCGGCCGTATACCGGTGGGAAACTTCACCTAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

Helix-hairpin-helix domain (HHH_5)

(94-138)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-639)

AAA domain (AAA_30)

(335-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.325

100

0.367