Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   L6503_RS05770 Genome accession   NZ_CP091770
Coordinates   1211610..1211891 (+) Length   93 a.a.
NCBI ID   WP_001277275.1    Uniprot ID   -
Organism   Helicobacter pylori strain K115     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1206610..1216891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6503_RS05750 (L6503_05750) groES 1207190..1207546 (-) 357 WP_180577125.1 co-chaperone GroES -
  L6503_RS05755 (L6503_05755) dnaG 1207821..1209500 (+) 1680 WP_237775482.1 DNA primase -
  L6503_RS05760 (L6503_05760) - 1209497..1210549 (+) 1053 WP_096391855.1 MnmA/TRMU family protein -
  L6503_RS05765 (L6503_05765) - 1210638..1211465 (+) 828 WP_237775483.1 DUF5718 family protein -
  L6503_RS05770 (L6503_05770) comB2 1211610..1211891 (+) 282 WP_001277275.1 TrbC/VirB2 family protein Machinery gene
  L6503_RS05775 (L6503_05775) comB3 1211891..1212154 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  L6503_RS05780 (L6503_05780) comB4 1212156..1214519 (+) 2364 WP_237775484.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  L6503_RS05790 (L6503_05790) - 1214840..1216180 (+) 1341 WP_237775485.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10565.85 Da        Isoelectric Point: 9.0456

>NTDB_id=653532 L6503_RS05770 WP_001277275.1 1211610..1211891(+) (comB2) [Helicobacter pylori strain K115]
MSAYFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=653532 L6503_RS05770 WP_001277275.1 1211610..1211891(+) (comB2) [Helicobacter pylori strain K115]
ATGTCCGCTTATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978