Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG764_RS10650 Genome accession   NZ_CP108095
Coordinates   2447310..2448101 (+) Length   263 a.a.
NCBI ID   WP_328968187.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2442310..2453101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS10635 (OG764_10635) - 2442345..2443082 (-) 738 WP_328968184.1 DUF2071 domain-containing protein -
  OG764_RS10640 (OG764_10640) - 2443257..2446145 (-) 2889 WP_328968185.1 vitamin B12-dependent ribonucleotide reductase -
  OG764_RS10645 (OG764_10645) nrdR 2446296..2446808 (-) 513 WP_328968186.1 transcriptional regulator NrdR -
  OG764_RS10650 (OG764_10650) dinR/lexA 2447310..2448101 (+) 792 WP_328968187.1 transcriptional repressor LexA Regulator
  OG764_RS10655 (OG764_10655) - 2448181..2450151 (-) 1971 WP_328968188.1 ATP-dependent DNA helicase -
  OG764_RS10660 (OG764_10660) - 2450189..2452042 (-) 1854 WP_328968189.1 IucA/IucC family siderophore biosynthesis protein -
  OG764_RS10665 (OG764_10665) - 2452104..2452859 (-) 756 WP_328968190.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28425.21 Da        Isoelectric Point: 7.4239

>NTDB_id=653505 OG764_RS10650 WP_328968187.1 2447310..2448101(+) (dinR/lexA) [Streptomyces sp. NBC_00239]
MTTTADSATITAQNRSQSRLEPVHAMNDAAMTPEGDGVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=653505 OG764_RS10650 WP_328968187.1 2447310..2448101(+) (dinR/lexA) [Streptomyces sp. NBC_00239]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCATGACCCCGGAGGGTGACGGCGTGCGCCCGGCACGCTCCCTGCCCGGCCGACCTCCTGGCATCCGAGCGG
ACAGTTCCGGTCTCACGGACCGGCAGCGGCGGGTCATCGAGGTCATCAGGGACTCGGTACAGCGGCGCGGGTACCCACCG
TCGATGCGGGAGATCGGCCAGGCCGTCGGCCTGTCCAGCACCTCCTCCGTCGCCCACCAGCTGATGGCTCTGGAGCGCAA
GGGCTTCCTGCGGCGCGACCCGCACCGCCCCCGGGCGTACGAGGTGCGCGGCTCTGACCAGCCCAGCTCGCAGCCCACGG
ACACCACTGGCAAGCCCGCCGCCTCGTACGTGCCGCTCGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTGGCCGAGGAG
TCCGTCGAGGACGTCTTCCCGCTGCCGCGGCAGCTGGTCGGCGACGGCGAGCTCTTCGTACTGAAGGTCGTCGGCGACTC
CATGATCGAGGCGGCCATCTGCGACGGGGACTGGGTGACCGTCCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTGG
CCGCGATGCTGGACGGCGAGGCCACCGTGAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTCCCGCACAACGCC
GCCTACCAGCCGATCCCGGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCCGTGCTGCGACGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376