Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OHT59_RS29885 Genome accession   NZ_CP108094
Coordinates   6715528..6717756 (+) Length   742 a.a.
NCBI ID   WP_266827692.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00243     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6710528..6722756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT59_RS29870 (OHT59_29870) - 6710820..6712766 (-) 1947 WP_326722982.1 substrate-binding domain-containing protein -
  OHT59_RS29875 (OHT59_29875) - 6712756..6714279 (-) 1524 WP_326722983.1 sugar ABC transporter ATP-binding protein -
  OHT59_RS29880 (OHT59_29880) - 6714342..6715358 (-) 1017 WP_326722984.1 LacI family DNA-binding transcriptional regulator -
  OHT59_RS29885 (OHT59_29885) recD/recD2/recDB 6715528..6717756 (+) 2229 WP_266827692.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHT59_RS29890 (OHT59_29890) - 6718044..6719333 (+) 1290 WP_266461889.1 citrate synthase -
  OHT59_RS29895 (OHT59_29895) - 6719876..6722140 (-) 2265 WP_326722985.1 heavy metal translocating P-type ATPase -
  OHT59_RS29900 (OHT59_29900) - 6722243..6722482 (-) 240 WP_326722986.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 80420.04 Da        Isoelectric Point: 6.7891

>NTDB_id=653461 OHT59_RS29885 WP_266827692.1 6715528..6717756(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00243]
MSQLAVLEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGSLLGAQVGESLRMEGRWGSHPQFGKQFTVENYTTLLPA
TVQGIRRYLGSGLVKGIGPVFADRITQHFGLDTLQIIEEEPKRLIEVPGLGPKRTKKIADAWEEQKAIKEVMLFLQTVEV
STSIAVRIYKKYGDASISVVKNQPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSTDQGHCYLPEERL
IADAVKLLQVDTGLVIECLAELAAPAEEGEDPGVVREKVPGPDGGDPVTAIYLVPFHRAELSLSAQLLRLLRTDQDRMPG
FHDVAWDKALAWLKGRTGTELAPEQEEAVRLALTKKVAVLTGGPGCGKSFTVRSIVELARAKRAKVVLAAPTGRAAKRLA
ELTGAEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLR
DLLADGGPVPAVRLTRVFRQAQQSGVVTNAHRINSGQHPHTENMKDFFLFVEDDTEEAGRLTVDVAARRIPAKFGLDPRR
DVQVLAPMHRGPAGAGALNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGVVTSLDAEEQR
LTVLTDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQA
VRTVSAGRRCTALDFRLSGAHL

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=653461 OHT59_RS29885 WP_266827692.1 6715528..6717756(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00243]
ATGTCTCAGCTGGCTGTCCTGGAGGGCGTACTCGAGCGGATCACGTACGCCAACGAGGAGAACGGGTACACGGTCGCGCG
GGTCGACACGGGCCGCGGCGGCGGCGACCTGCTCACCGTCGTCGGCTCGCTGCTCGGCGCGCAGGTGGGGGAGTCCCTGC
GCATGGAGGGCCGCTGGGGCTCCCATCCGCAGTTCGGCAAGCAGTTCACGGTGGAGAACTACACGACGCTGCTGCCGGCC
ACCGTCCAGGGCATCCGCCGCTATCTCGGCTCGGGCCTGGTCAAGGGCATCGGCCCGGTCTTCGCCGACCGGATCACCCA
GCACTTCGGCCTGGACACCCTGCAGATCATCGAGGAGGAGCCGAAGCGGCTCATCGAGGTGCCGGGGCTCGGCCCCAAGC
GCACCAAGAAGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATGCTCTTCCTCCAGACCGTCGAGGTG
TCCACCTCGATCGCGGTCCGCATCTACAAGAAGTACGGCGACGCGTCGATCTCGGTGGTCAAGAACCAGCCCTACCGGCT
CGCCTCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGTCCGTCGGCATACCGCACGACAGCCCGG
AGCGCGTCAAGGCCGGTCTCCAGTACGCCCTTTCGCAGTCCACCGACCAGGGCCACTGCTATCTCCCCGAGGAGCGCCTG
ATCGCGGACGCCGTGAAGCTCCTCCAGGTGGACACGGGCCTCGTCATCGAGTGCCTCGCGGAGCTGGCGGCACCGGCCGA
GGAAGGCGAGGACCCCGGTGTCGTACGGGAGAAGGTGCCGGGCCCGGACGGCGGCGACCCGGTGACGGCCATCTACCTGG
TCCCCTTCCACCGCGCCGAACTCTCCCTCTCCGCCCAGCTGTTGCGCCTCCTGCGCACCGACCAGGACCGGATGCCCGGC
TTCCACGACGTGGCCTGGGACAAGGCCCTCGCCTGGCTGAAGGGGCGTACGGGCACGGAGCTGGCGCCCGAGCAGGAGGA
GGCGGTCCGGCTCGCGCTCACCAAGAAGGTCGCCGTGCTCACCGGCGGCCCCGGCTGCGGCAAGTCCTTCACGGTCCGCT
CGATCGTGGAACTGGCGCGCGCCAAGCGGGCGAAGGTCGTCCTGGCCGCCCCCACGGGGCGCGCCGCCAAGCGGCTCGCC
GAGCTGACCGGGGCCGAGGCGTCCACCGTGCACCGGCTCCTGGAGCTCAAGCCGGGCGGCGACGCGGCGTACGACAAGGA
CCGGCCGCTGGACGCCGACCTGGTGGTTGTGGACGAGGCCTCGATGCTCGACCTGCTCCTCGCCAACAAGCTGGTGAAGG
CGGTGCCCCCGGGCGCCCATCTGCTCTTCGTCGGAGATGTCGACCAGCTCCCCAGCGTCGGCGCCGGCGAGGTGCTGCGC
GATCTGCTCGCCGACGGCGGCCCGGTCCCGGCGGTCCGCCTCACCCGGGTCTTCCGGCAGGCCCAGCAGTCCGGGGTGGT
GACGAACGCGCACCGGATCAACTCGGGGCAGCACCCGCACACGGAGAACATGAAGGACTTCTTCCTCTTCGTCGAGGACG
ACACCGAGGAGGCGGGACGGCTCACGGTGGACGTGGCGGCACGGCGGATTCCGGCCAAGTTCGGGCTCGACCCGCGCCGC
GATGTCCAGGTCCTCGCGCCGATGCACCGGGGCCCGGCGGGCGCGGGCGCCCTCAACGGCCTCCTCCAGCAGGCCATCAC
GCCCGCCCGCCCGGACCTCCCCGAAAAGCGCTTCGGAGGCCGCGTCTTCCGGGTCGGCGACAAGGTCACCCAGATTCGCA
ACAATTACGAGAAGGGCAAGAACGGCGTCTTCAACGGCACCGTGGGCGTCGTCACCTCGCTGGACGCGGAGGAGCAGCGC
CTGACCGTGCTGACCGACGAGGACGAGGAGGTGCCGTACGACTTCGACGAACTCGACGAGCTGGCCCACGCGTACGCGGT
GACGATCCACCGCTCCCAGGGCAGCGAGTACCCGGCGGTGGTGATCCCGGTCACCACGGGCGCGTGGATGATGCTCCAGC
GCAACCTCCTCTACACGGCCGTCACCCGCGCGAAGAAGCTGGTCGTCCTCGTCGGCTCCCGCAAGGCGATAGGCCAGGCG
GTCCGCACGGTCTCCGCCGGACGGCGGTGCACGGCCCTGGACTTCCGGCTGTCGGGGGCACACCTCTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(340-520)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(578-643)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-711)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

Helix-hairpin-helix domain (HHH_5)

(94-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.789

100

0.367