Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHT52_RS21920 Genome accession   NZ_CP108093
Coordinates   5048862..5050595 (-) Length   577 a.a.
NCBI ID   WP_328721882.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00247     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5043862..5055595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT52_RS21910 (OHT52_21890) - 5045702..5046841 (+) 1140 WP_328723843.1 RNA polymerase sigma factor -
  OHT52_RS21915 (OHT52_21895) - 5046937..5048862 (-) 1926 WP_328721881.1 ABC transporter ATP-binding protein -
  OHT52_RS21920 (OHT52_21900) rcrP 5048862..5050595 (-) 1734 WP_328721882.1 ABC transporter ATP-binding protein Regulator
  OHT52_RS21925 (OHT52_21905) - 5050716..5052188 (-) 1473 WP_328721883.1 FGGY family carbohydrate kinase -
  OHT52_RS21930 (OHT52_21910) - 5052297..5052602 (-) 306 WP_328721884.1 YtxH domain-containing protein -
  OHT52_RS21950 (OHT52_21930) - 5053872..5054384 (+) 513 WP_328721885.1 hypothetical protein -
  OHT52_RS21955 (OHT52_21935) - 5054675..5055103 (-) 429 WP_328721886.1 type II toxin-antitoxin system HicB family antitoxin -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62754.00 Da        Isoelectric Point: 5.8347

>NTDB_id=653369 OHT52_RS21920 WP_328721882.1 5048862..5050595(-) (rcrP) [Streptomyces sp. NBC_00247]
MLIKLLRSFLGPYRRPILLLVFLQLLQTCASLYLPSLNADIIDNGVVKGDTGYILEYGGVMIAVSLLQVVCNVGAVYFGA
RTASALGRDLRASVFDRVQSFSAREVARFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGVVMALGQDVPLSAV
LLAVVPLLGISVSLIVRKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEVKRFRGANTELTDVAVSTGRLMAL
MFPTVMTVVNVSSVAVVWFGAHRIDSGGMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIDEVLETESSVVP
PVAPVTELRRHGHLELRGAEFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTEGEVLVDGTDVR
TLDAALLAKTVSLVPQKPYLFSGTVASNLRYGNPDATDEELWHALEVAQAKEFVELLENGLNAPIAQGGTNVSGGQRQRL
AIARTLVRKPEIYLFDDSFSALDYATDAALRAALARETAAATVVIVAQRVSTIREADRILVLDEGRVVGTGTHRELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=653369 OHT52_RS21920 WP_328721882.1 5048862..5050595(-) (rcrP) [Streptomyces sp. NBC_00247]
GTGCTCATAAAACTGCTCAGGTCCTTCCTGGGCCCCTACCGAAGGCCGATCCTGCTGCTGGTGTTCCTCCAGCTGCTGCA
GACCTGCGCCTCGCTCTACCTGCCCAGCCTGAACGCCGACATCATCGACAACGGTGTCGTGAAGGGCGACACGGGCTACA
TCCTGGAGTACGGCGGCGTGATGATCGCCGTCAGCCTCCTCCAGGTCGTCTGCAACGTCGGTGCCGTCTACTTCGGGGCG
CGGACCGCTTCCGCGCTCGGCCGTGACCTGCGGGCCTCGGTCTTCGACCGGGTGCAGTCGTTCTCGGCCCGGGAGGTCGC
CCGCTTCGGGGCCCCCTCGTTGATCACCCGTACGACCAACGACGTCCAGCAGATCCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGCGTCGGCGGGGTCGTCATGGCGCTGGGCCAGGACGTGCCGCTCTCCGCCGTG
CTGCTGGCCGTGGTGCCGCTGCTGGGGATCTCGGTGAGTCTGATCGTCCGGAAGATGCGGCCGCTCTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGTGTGATCCGTGCCTTCGTGCGCGACG
GGTACGAGGTGAAGCGGTTCCGCGGCGCGAACACCGAGCTGACCGACGTGGCGGTGTCCACGGGCCGGCTGATGGCGCTG
ATGTTCCCGACGGTGATGACCGTGGTGAACGTGTCGTCCGTCGCGGTGGTGTGGTTCGGTGCGCACCGGATCGACAGTGG
CGGGATGCAGATCGGCGCGCTGACGGCGTTCCTGTCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCGGAGCGCATCGACGAGGTGTTGGAGACCGAGTCGAGCGTGGTGCCG
CCCGTCGCCCCGGTGACGGAGTTGCGCCGGCACGGCCACCTGGAGCTGCGGGGTGCGGAGTTCCGCTACCCGGGGGCCGA
GGAGCCGGTGCTGCGCTCGGTGGACCTGGTGGCCCGGCCCGGGGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCGAGGCTGTTCGACGTGACGGAGGGCGAGGTCCTCGTCGACGGCACGGACGTGCGG
ACGCTGGACGCGGCGCTGCTGGCGAAGACGGTGAGCCTGGTCCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTGGCGTC
GAACCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGGAGCTGCTGGAGAACGGTCTGAACGCGCCGATCGCCCAGGGCGGTACCAACGTCTCCGGTGGTCAGCGGCAGCGTCTG
GCCATCGCCCGGACGCTGGTGCGCAAGCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTCGACTACGCGACCGA
CGCGGCGTTGCGCGCGGCGCTCGCGCGGGAGACGGCCGCCGCGACGGTGGTGATCGTCGCGCAGCGGGTGTCCACCATCC
GCGAGGCGGACCGGATTCTCGTCCTGGACGAGGGGCGGGTCGTGGGCACGGGTACCCATCGCGAACTGATGGACGGCAAT
GAGACGTACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCGGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.55

100

0.409