Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OHT52_RS20220 Genome accession   NZ_CP108093
Coordinates   4675654..4677897 (+) Length   747 a.a.
NCBI ID   WP_328721588.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4670654..4682897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT52_RS20205 (OHT52_20180) - 4671073..4672194 (+) 1122 WP_328721585.1 PP2C family protein-serine/threonine phosphatase -
  OHT52_RS20210 (OHT52_20185) - 4672213..4672680 (-) 468 WP_328721586.1 hypothetical protein -
  OHT52_RS20215 (OHT52_20190) - 4673119..4675590 (+) 2472 WP_328721587.1 hypothetical protein -
  OHT52_RS20220 (OHT52_20195) recD/recD2/recDB 4675654..4677897 (+) 2244 WP_328721588.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHT52_RS20225 (OHT52_20200) - 4678127..4679425 (+) 1299 WP_328721589.1 citrate synthase -
  OHT52_RS20230 (OHT52_20205) - 4680125..4682413 (-) 2289 WP_328721590.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 80735.37 Da        Isoelectric Point: 7.1043

>NTDB_id=653365 OHT52_RS20220 WP_328721588.1 4675654..4677897(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00247]
MPNTPTPPPNLAVLEGVLERITYANEENGYTVARVDTGRGGDLLTVVGSLLGAQPGESLRMEGRWASHQQYGKQFVVENY
TTVLPATIQGIRRYLGSGLIKGIGPVMADRITTHFGTDTLDIIENAPKRLVEVPGLGPKRTKKIADAWEEQKAIKEVMIF
LQSVGVSTSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVRAGLQYALSQSSDQGHCY
LPEERLIADGVKLLQVDTGLVIDCLAELAADPEGVVREKVPGPEGGEPVTAVYLVPFHRAELSLAGQVRRLLRTPEDRMP
AFGDVDWEKALQWLARRTGATLAPEQEAAVRLALSRKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAKRL
SELTGAEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVL
RDLLAEGGPVPAVRLTRIFRQAQQSGVVTNAHRINSGQPPLTQGMDDFFLFVEDETEDAGVLAVDVAARRIPKKFGLDPR
RDIQVLTPMHRGPAGAGHLNGLLQQVITPGRPELPEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVGVVTSLDTDEQ
RLTVRTDEDEEIGYDFDELDELAHAYAMTIHRSQGSEYPAVVVPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQ
AVRTVSAGRRCTALDFRLRGGAGGDSP

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=653365 OHT52_RS20220 WP_328721588.1 4675654..4677897(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00247]
ATGCCCAACACGCCCACCCCGCCCCCCAACCTGGCAGTCCTCGAAGGGGTCCTGGAGCGGATCACCTACGCCAACGAGGA
GAACGGCTACACCGTCGCCCGTGTCGACACCGGGCGCGGCGGAGATCTGCTGACCGTGGTGGGTTCACTGCTCGGCGCGC
AGCCGGGGGAGTCGCTGCGGATGGAGGGCCGCTGGGCCTCCCACCAGCAGTACGGCAAGCAGTTCGTCGTGGAGAACTAC
ACGACGGTCCTCCCCGCGACCATCCAGGGCATCCGCCGCTACCTCGGCTCCGGGCTGATCAAGGGCATTGGCCCGGTCAT
GGCCGACCGGATCACCACCCACTTCGGCACCGACACCCTCGACATCATCGAGAACGCGCCCAAGCGGCTCGTGGAGGTCC
CCGGGCTCGGTCCCAAGCGTACGAAGAAGATCGCCGACGCATGGGAGGAACAGAAGGCGATCAAGGAGGTCATGATCTTC
CTCCAGTCGGTCGGGGTCTCGACCTCGATCGCGGTGCGGATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAA
GAACCAGCCCTACCGGCTGGCCGCCGACGTCTGGGGCATCGGCTTCCTGACCGCCGACCGGATCGCCCAGGCGGTCGGCA
TCCCGCACGACAGCCCGGAGCGGGTGCGCGCCGGACTCCAGTACGCCCTCTCCCAGTCCTCCGACCAGGGCCACTGCTAC
CTCCCCGAGGAGCGGCTGATCGCGGACGGGGTGAAGCTCCTCCAGGTGGACACCGGGCTGGTCATCGACTGCCTCGCCGA
ACTGGCTGCCGACCCGGAGGGCGTCGTACGGGAGAAGGTGCCGGGTCCGGAGGGCGGGGAGCCGGTGACGGCGGTGTACC
TCGTCCCCTTCCACCGGGCGGAACTCTCCCTCGCCGGGCAGGTACGCCGACTGCTGCGTACCCCGGAAGACCGGATGCCC
GCCTTCGGGGACGTGGACTGGGAGAAGGCGCTCCAGTGGCTGGCCCGGCGGACGGGCGCCACCCTCGCTCCCGAACAGGA
GGCGGCGGTACGGCTCGCGCTGAGCCGGAAGGTGGCCGTACTGACCGGCGGGCCCGGGTGCGGCAAGTCGTTCACCGTGC
GGTCCGTGGTCGAGCTGGCCCGCGCCAAGAAGGCGAAGGTCGTGCTGGCCGCTCCCACCGGGCGGGCCGCGAAGCGGCTC
TCCGAGCTGACCGGCGCCGAGGCGTCCACCGTGCACCGCCTCCTCGAACTGAAGCCGGGCGGGGACGCCGCGTACGACAA
GGACCGTCCGCTCGACGCCGATCTGGTGGTCGTGGACGAGGCGTCCATGCTCGATCTGCTGCTCGCCAACAAGCTCGTGA
AAGCGGTGGCACCCGGTGCCCACCTCCTGCTCGTCGGCGACGTCGACCAGCTCCCCTCGGTCGGCGCGGGCGAGGTGCTG
CGGGACCTGCTCGCCGAGGGCGGGCCCGTCCCGGCCGTCCGGCTGACCCGCATCTTCCGCCAGGCGCAGCAGTCCGGCGT
GGTCACCAACGCCCACCGCATCAACTCCGGACAACCTCCGCTCACCCAGGGGATGGACGACTTCTTCCTCTTCGTGGAGG
ACGAGACGGAGGACGCCGGGGTGCTCGCCGTGGACGTCGCGGCACGCCGCATCCCGAAGAAGTTCGGCCTCGATCCGCGC
CGCGACATCCAGGTGCTCACCCCGATGCACCGGGGACCGGCCGGCGCCGGGCACCTCAACGGACTGCTCCAACAGGTCAT
CACCCCGGGCCGCCCCGAACTGCCGGAGAAGCGGTTCGGTGGCCGGGTCTTCCGCGTCGGCGACAAGGTCACGCAGATCC
GCAACAACTACGAGAAGGGCGAGAACGGCGTGTTCAACGGCACCGTCGGCGTCGTGACCTCGCTCGACACCGACGAGCAG
CGGCTGACGGTGCGCACCGACGAGGACGAGGAGATCGGGTACGACTTCGACGAGTTGGACGAGCTGGCACACGCCTACGC
CATGACGATCCACCGCTCCCAGGGCAGCGAGTACCCGGCGGTCGTCGTCCCCGTCACCACCAGCGCCTGGATGATGCTCC
AGCGCAACCTGCTCTACACGGCGGTGACCCGGGCCAAGAAGCTCGTCGTCCTGGTCGGCTCCCGCAAGGCGATCGGGCAG
GCGGTCCGCACGGTTTCCGCCGGAAGGCGCTGTACGGCGCTGGATTTCCGGCTCAGGGGAGGGGCGGGGGGAGACTCACC
GTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(341-520)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(664-712)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(579-645)

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-240)

Helix-hairpin-helix domain (HHH_5)

(100-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.387

100

0.361