Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHT77_RS30370 Genome accession   NZ_CP108087
Coordinates   6859484..6861412 (-) Length   642 a.a.
NCBI ID   WP_328831601.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00252     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6854484..6866412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT77_RS30355 (OHT77_30360) - 6854737..6856014 (+) 1278 WP_328831598.1 FAD-dependent oxidoreductase -
  OHT77_RS30360 (OHT77_30365) dnaG 6856050..6857954 (+) 1905 WP_328831599.1 DNA primase -
  OHT77_RS30365 (OHT77_30370) - 6858036..6859346 (+) 1311 WP_328831600.1 RNA polymerase sigma factor -
  OHT77_RS30370 (OHT77_30375) rcrQ 6859484..6861412 (-) 1929 WP_328831601.1 ABC transporter ATP-binding protein Regulator
  OHT77_RS30375 (OHT77_30380) rcrP 6861412..6863145 (-) 1734 WP_266768398.1 ABC transporter ATP-binding protein Regulator
  OHT77_RS30380 (OHT77_30385) - 6863309..6864766 (-) 1458 WP_328831603.1 FGGY family carbohydrate kinase -
  OHT77_RS30385 (OHT77_30390) - 6864818..6865123 (-) 306 WP_266768396.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69613.30 Da        Isoelectric Point: 6.7323

>NTDB_id=653215 OHT77_RS30370 WP_328831601.1 6859484..6861412(-) (rcrQ) [Streptomyces sp. NBC_00252]
MAGPMGRMMAGTGPDARSMDFKVSGKRLIGQFRPERVTIGILLMCVVVSVGLNVVGPKILGNATDLVFAGIIGRQMPAGT
TKAQALQAMRDRGQGSVADMLKSTDFTPGKGIDFTSVGHVLLLALCTFLVAGLLMAVATRMVNRAVNRTMFRLRESVQTK
MSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSFLVATRIGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHNLVKVFGRQDESAHLFAEQNNALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQAPDPMPSERPAELRGLVALE
HVSFRYDPDKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSRDELRSGIGMVLQDT
WLFGGSIADNIAYGASREVTRGEIEEAARAAHADRFVRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHTDLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=653215 OHT77_RS30370 WP_328831601.1 6859484..6861412(-) (rcrQ) [Streptomyces sp. NBC_00252]
ATGGCCGGGCCCATGGGGCGGATGATGGCCGGGACGGGCCCCGACGCCCGTTCGATGGACTTCAAGGTGTCCGGCAAGCG
GCTGATCGGCCAGTTCAGGCCGGAGCGGGTGACCATCGGCATCCTGCTGATGTGCGTCGTGGTGAGCGTCGGGCTGAACG
TGGTCGGGCCGAAGATCCTCGGCAACGCCACCGACCTGGTGTTCGCGGGCATCATCGGGCGGCAGATGCCGGCCGGGACG
ACCAAGGCGCAGGCTCTCCAGGCGATGCGCGACCGCGGCCAGGGTTCGGTCGCGGACATGCTCAAGAGCACGGACTTCAC
GCCGGGCAAGGGCATCGACTTCACCTCGGTGGGTCATGTGCTGCTGCTCGCGCTGTGCACGTTCCTGGTGGCCGGGCTGC
TGATGGCGGTGGCGACCCGGATGGTCAACCGGGCGGTCAACCGGACCATGTTCCGGCTGCGCGAGAGCGTGCAGACGAAG
ATGTCGCGGCTCCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTGTCCCGCGCGACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACGATCATCGGCGTCCTCGCGATGATGT
TCTGGGTGTCCTGGCTGCTCGCCCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCCTCGTCGCCACCCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CAACCTGGTCAAGGTCTTCGGCCGGCAGGACGAGTCGGCGCACCTGTTCGCCGAGCAGAACAACGCGCTGTACGAGGCGG
GCTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTCTCGAACCTCAACTACGTGCTGGTGGCG
GTGGTGGGCGGCCTGCGCGTCGCGTCCGGTTCGCTCTCCATCGGCGATGTGCAGGCGTTCGTCCAGTACTCGCGCCAGTT
CTCCATGCCGCTGACCCAGGTCGCGTCGATGGCGAACCTGGTCCAGTCCGGCGTCGCCTCGGCCGAGCGGATCTTCGAAC
TCCTCGACGCCGAGGAGCAGGCCCCCGACCCGATGCCGAGCGAACGCCCCGCGGAACTGCGCGGCCTGGTCGCCCTGGAG
CACGTCTCCTTCCGCTACGACCCCGACAAGCCGCTCATCGAGGACCTCTCGCTGACGGTGGAACCGGGCCACACGGTCGC
GATCGTCGGCCCGACCGGTGCCGGCAAGACGACCCTGGTGAACCTCCTCATGCGGTTCTACGAGGTCTCCGGCGGGCGCA
TCACCCTCGACGGCGTGGACATCGCGCGGATGTCCCGGGACGAACTCCGGTCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCTCCATCGCGGACAACATCGCGTACGGGGCCTCGCGCGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCGGCGCACGCCGACCGGTTCGTCCGTACGCTGCCCGAGGGCTACGACACGGTCATCGACGACGAGGGCACGG
GCGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGACGATCCTGGTGCTCGACGAG
GCGACGTCCTCCGTGGACACCCGCACGGAGGTGTTGATCCAGAAGGCGATGGCCAAGCTCGCGCACGGCCGCACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGCTCCATCGTCGAACAGG
GCGCGCACACGGACCTGTTGGCGGCGGACGGGGCGTATGCGCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTTGCGGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.129

96.262

0.386