Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   OHU11_RS29500 Genome accession   NZ_CP108082
Coordinates   6601031..6602764 (-) Length   577 a.a.
NCBI ID   WP_259927400.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00257     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 6596031..6607764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU11_RS29490 (OHU11_29465) - 6597928..6599031 (+) 1104 WP_266691003.1 RNA polymerase sigma factor -
  OHU11_RS29495 (OHU11_29470) - 6599094..6601031 (-) 1938 WP_266691004.1 ABC transporter ATP-binding protein -
  OHU11_RS29500 (OHU11_29475) rcrP 6601031..6602764 (-) 1734 WP_259927400.1 ABC transporter ATP-binding protein Regulator
  OHU11_RS29505 (OHU11_29480) - 6602933..6604378 (-) 1446 WP_266691005.1 FGGY family carbohydrate kinase -
  OHU11_RS29510 (OHU11_29485) - 6604448..6604747 (-) 300 WP_124717825.1 YtxH domain-containing protein -

Sequence


Protein


Download         Length: 577 a.a.        Molecular weight: 62647.80 Da        Isoelectric Point: 5.3993

>NTDB_id=653134 OHU11_RS29500 WP_259927400.1 6601031..6602764(-) (rcrP) [Streptomyces sp. NBC_00257]
MLIKLLRAYLGPYRKPILLLVLLQLLQTCASLYLPTLNADIIDNGVVQGDTGYILEFGGIMIAVSIAQVVCNMGAVHIGA
RTASALGRDVRASIFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQERVDTVNRVLREQITGNRVIRAFVRDGYEEERFRGSNTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVIWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVKPVRKLLARGHLEVRGADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPALLARTVGLVPQKPYLFSGTVATNLRYGNPDATDEELWQALEVAQAKEFVTALEHGLDAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALSRETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=653134 OHU11_RS29500 WP_259927400.1 6601031..6602764(-) (rcrP) [Streptomyces sp. NBC_00257]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAGAAAACCCATCCTGCTGCTGGTCCTCCTCCAACTGCTGCA
GACCTGCGCCAGCCTCTACCTGCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTCCAGGGGGACACGGGCTACA
TCCTCGAATTCGGCGGCATCATGATCGCCGTCAGCATCGCCCAGGTGGTCTGCAACATGGGGGCCGTCCACATCGGCGCC
CGTACCGCCTCCGCTCTCGGCCGCGATGTCCGGGCGTCGATCTTCGACCGGGTGCAGTCGTTCTCGGCGCGTGAGGTCGG
GCGCTTCGGGGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACGTTCA
CGCTGATGGTGTCGGCCCCCATCATGTGCGTCGGCGGCATCGTCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGCCTGATCGTGAAGCGGATGCGCCCGCTGTTCCGCACGATGCA
GGAGCGGGTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGGGACG
GCTACGAGGAGGAGCGGTTCCGCGGCTCCAACACCGAGCTGACGGACGTGGCACTGTCCACGGGCCGGCTGATGGCGCTG
ATGTTCCCCACCGTGATGACGGTCGTGAACGTCTCCTCGATCGCGGTGATCTGGTTCGGTGCCCACCGCATCGACAGCGG
CGGCATGGAGATCGGGGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCGACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCCAGCGTGGTCCCG
CCCGTCAAGCCGGTCCGCAAGCTGCTCGCCCGCGGTCATCTGGAGGTGCGCGGCGCGGACTTCCGCTATCCGGGCGCCGA
GGAGCCGGTGCTGCGGTCGGTGGATCTGGTGGCCCGCCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACCCTGCTCGGTCTCGTACCGCGGCTGTTCGACGTGACGGACGGCCAGGTGCTGGTCGACGGCACGGATGTGCGG
ACGCTGGAGCCGGCGCTGCTGGCCAGGACCGTGGGTCTCGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
CAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCAGGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCACGGCGCTGGAGCACGGTCTGGACGCGCCGATCTCGCAGGGCGGCACCAATGTGTCGGGCGGGCAGCGGCAGCGTCTG
GCCATCGCCAGGACGCTGGTGCAGCGCCCCGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCCACCGA
CGCCGCGCTGCGCGGGGCGCTCTCCCGGGAGACGGCGGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GCGACGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGCTCCGGCACCCATCACGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.966

100

0.404