Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG718_RS34395 Genome accession   NZ_CP108081
Coordinates   7723617..7725878 (+) Length   753 a.a.
NCBI ID   WP_143632367.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7718617..7730878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS34380 (OG718_34360) - 7718628..7720583 (-) 1956 WP_143632373.1 substrate-binding domain-containing protein -
  OG718_RS34385 (OG718_34365) - 7720573..7722126 (-) 1554 WP_328845989.1 sugar ABC transporter ATP-binding protein -
  OG718_RS34390 (OG718_34370) - 7722123..7723163 (-) 1041 WP_328845990.1 LacI family DNA-binding transcriptional regulator -
  OG718_RS34395 (OG718_34375) recD/recD2/recDB 7723617..7725878 (+) 2262 WP_143632367.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG718_RS34400 (OG718_34380) - 7726498..7727787 (+) 1290 WP_143632365.1 citrate synthase -
  OG718_RS34405 (OG718_34385) - 7728414..7730684 (-) 2271 WP_328845991.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 81706.35 Da        Isoelectric Point: 6.3467

>NTDB_id=653029 OG718_RS34395 WP_143632367.1 7723617..7725878(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00258]
MSKQGAGNGERNLAVLEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGALLGAQVGESLRMEGRWGSHQQYGKQFTV
ENYTTVLPATVQGIRRYLGSGLVKGIGPIFADRITQHFGLDTLQIIEEEPKRLIEVPGLGPKRTKKIAEAWEEQKAIKEV
MLFLQTVEVSTSIAVRIYKKYGDASISVVKNQPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSTDQG
HCFLPEEQLIADAVKLLQVDTGLVIECLAELAAPTEEGEEPGVVRERVPGLDGGDPVTAIYLVPFHRAELSLSAQLLRLL
RTDEDRMPGFRNVAWDKALAWLKDRTGVELAPEQEEAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAP
TGRAAKRLAELTGADASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAIPPGAHLLFVGDVDQLP
SVGAGEVLRDLLAEGGPVPAVRLTRVFRQAQQSGVVTNAHRINEGRHPITDGLKDFFLFVEDDTEEAGRLTVDVAARRIP
AKFGLDPRRDVQVLAPMHRGPAGAGTLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVGVV
TSLNLDDQRLTVLTDEDEEVPYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKQLVVLV
GSRKALGQAVRTVSAGRRCTSLDHRLSGARLPN

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=653029 OG718_RS34395 WP_143632367.1 7723617..7725878(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00258]
ATGTCCAAGCAAGGGGCGGGGAACGGGGAGCGGAACCTGGCGGTTCTGGAGGGCGTGCTGGAGCGGATCACGTACGCCAA
TGAGGAGAACGGCTACACGGTGGCCCGGGTGGACACGGGTCGAGGTGGCGGTGATCTCCTCACGGTCGTCGGGGCGCTGC
TCGGCGCCCAGGTGGGGGAGTCCCTGCGGATGGAGGGCCGTTGGGGCTCCCATCAGCAGTACGGGAAGCAGTTCACCGTC
GAGAACTACACGACCGTGCTGCCCGCCACCGTCCAGGGCATCCGCCGCTATCTCGGTTCCGGTCTGGTGAAGGGCATCGG
GCCGATCTTCGCCGACCGCATCACGCAGCACTTCGGGCTGGACACGCTGCAGATCATCGAGGAGGAGCCGAAGCGGCTCA
TCGAGGTTCCCGGTCTCGGCCCGAAGCGGACCAAGAAGATCGCCGAGGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTC
ATGCTCTTCCTCCAGACCGTCGAGGTGTCGACGTCGATCGCGGTCCGCATCTACAAGAAGTACGGCGACGCGTCGATCTC
GGTCGTGAAGAACCAGCCGTACCGCCTCGCGTCGGACGTCTGGGGCATCGGGTTCCTCACCGCCGACAAGATCGCCCAGT
CCGTGGGCATCCCGCACGACAGCCCGGAGCGCGTCAAGGCGGGCCTGCAGTACGCCCTTTCGCAGTCGACGGACCAGGGC
CACTGTTTCCTCCCGGAGGAGCAGCTGATCGCGGACGCGGTGAAACTGCTCCAGGTGGACACGGGCCTGGTCATCGAGTG
CCTCGCGGAGCTGGCGGCTCCGACCGAGGAGGGCGAGGAGCCGGGTGTCGTGCGGGAGCGCGTGCCCGGCCTGGACGGCG
GCGATCCGGTCACCGCCATCTACCTGGTCCCCTTCCACCGGGCCGAACTGTCCCTCTCGGCGCAGCTGTTGCGCCTCCTG
CGTACGGACGAGGACCGCATGCCGGGCTTCCGGAACGTGGCCTGGGACAAGGCACTTGCCTGGCTCAAGGACCGTACGGG
GGTGGAGCTGGCCCCCGAGCAGGAGGAGGCGGTCCGGCTCGCCCTCACCGAGAAGGTCGCGGTGCTCACGGGCGGGCCCG
GCTGTGGCAAGTCCTTCACGGTCCGTTCGATCGTGGAGCTGGCCAGGGCGAAGAAGGCGAAGGTCGTGCTGGCCGCGCCG
ACGGGCCGCGCCGCCAAACGACTTGCCGAACTGACCGGCGCCGACGCCTCCACCGTGCACCGGCTCCTTGAGCTGAAGCC
GGGCGGTGACGCGGCGTACGACAAGGACCGCCCGCTGGACGCGGACCTGGTGGTAGTGGACGAGGCGTCCATGCTGGACC
TCCTACTCGCCAACAAGCTGGTGAAGGCGATCCCTCCGGGGGCGCACCTGCTCTTCGTCGGGGACGTCGACCAGTTGCCG
AGCGTGGGGGCGGGCGAGGTGCTGCGGGATCTGCTCGCCGAGGGTGGGCCGGTCCCGGCGGTCCGTCTCACCCGGGTGTT
CCGGCAGGCCCAGCAGTCAGGGGTGGTGACGAACGCTCACCGGATCAACGAGGGCCGGCATCCGATCACGGACGGGCTCA
AGGACTTCTTCCTCTTCGTCGAGGACGACACGGAGGAGGCGGGGCGGCTGACGGTGGATGTGGCCGCGCGGCGCATTCCG
GCCAAGTTCGGCCTGGATCCCCGGCGTGACGTCCAGGTCCTGGCGCCCATGCACCGAGGCCCGGCAGGCGCCGGCACCCT
CAACGGCCTGCTCCAGCAGGCCATCACGCCGGCCCGCCCCGACCTCCCCGAGAAGCGGTTCGGCGGCCGCGTCTTCCGTG
TTGGCGACAAGGTCACCCAGATCCGCAACAACTACGAGAAGGGCGAGAACGGCGTCTTCAACGGCACGGTGGGGGTGGTG
ACTTCCCTCAACCTCGACGACCAGCGCCTCACGGTCCTGACGGACGAGGACGAGGAGGTCCCGTACGAGTTCGACGAGCT
CGACGAGCTGGCCCACGCGTACGCGGTGACGATCCACCGCTCCCAGGGCAGTGAGTATCCCGCCGTCGTCATCCCCGTCA
CCACGGGCGCCTGGATGATGCTCCAGCGCAACCTTCTGTATACGGCCGTCACTCGCGCCAAGCAGCTCGTAGTGCTGGTC
GGCTCCCGCAAGGCCCTCGGCCAGGCCGTTCGCACGGTGTCCGCCGGCCGCCGCTGCACGTCTTTGGACCACCGCCTGTC
CGGAGCCCGCCTCCCGAACTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-720)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(587-652)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

Helix-hairpin-helix domain (HHH_5)

(103-152)

AAA domain (AAA_30)

(349-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.921

100

0.363