Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   L4998_RS06780 Genome accession   NZ_CP091644
Coordinates   1302296..1302811 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter coli strain YH504     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1297296..1307811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4998_RS06765 (L4998_06765) - 1297407..1299224 (-) 1818 WP_126665358.1 motility associated factor glycosyltransferase family protein -
  L4998_RS06770 (L4998_06770) - 1299221..1301044 (-) 1824 WP_237437134.1 motility associated factor glycosyltransferase family protein -
  L4998_RS06775 (L4998_06775) - 1301056..1302296 (-) 1241 Protein_1316 DUF2920 family protein -
  L4998_RS06780 (L4998_06780) ctsG 1302296..1302811 (-) 516 WP_002799196.1 type II secretion system protein Machinery gene
  L4998_RS06785 (L4998_06785) tsaD 1302812..1303819 (-) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  L4998_RS06790 (L4998_06790) - 1303816..1305210 (-) 1395 WP_237437135.1 M99 family carboxypeptidase catalytic domain-containing protein -
  L4998_RS06795 (L4998_06795) dxr 1305207..1306283 (-) 1077 WP_002799194.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  L4998_RS06800 (L4998_06800) - 1306280..1307005 (-) 726 WP_002792130.1 phosphatidate cytidylyltransferase -
  L4998_RS06805 (L4998_06805) - 1307014..1307352 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=652975 L4998_RS06780 WP_002799196.1 1302296..1302811(-) (ctsG) [Campylobacter coli strain YH504]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=652975 L4998_RS06780 WP_002799196.1 1302296..1302811(-) (ctsG) [Campylobacter coli strain YH504]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTGAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942