Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT21_RS33205 Genome accession   NZ_CP108054
Coordinates   7328761..7329471 (-) Length   236 a.a.
NCBI ID   WP_328771950.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00286     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7323761..7334471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 7328761..7329471 (-) 711 - - Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 25542.25 Da        Isoelectric Point: 4.7845

>NTDB_id=652211 OHT21_RS33205 WP_328771950.1 7328761..7329471(-) (vraR) [Streptomyces sp. NBC_00286]
MTIRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAADGRKGVELARGTRPDVVLMDVRMPEMDGLAAARILLDPQEEDKDH
ETYDDGAAVSRPKVLMLTTFDADDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPKVTRRLIADFAQQRPAQ
RRRPAVQLDGLTPRETEVVELVARGLSNQEIANHLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLVTPGDR

Nucleotide


Download         Length: 711 bp        

>NTDB_id=652211 OHT21_RS33205 WP_328771950.1 7328761..7329471(-) (vraR) [Streptomyces sp. NBC_00286]
ATGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTTCGCGCCGGTTTCGCGGCCCTGTTGGCGGCGCAGAGCGA
TATCGACGTGGTGGGCGAGGCGGCGGACGGCAGAAAGGGTGTCGAGCTGGCCCGTGGCACGCGGCCCGACGTCGTGCTCA
TGGACGTACGGATGCCGGAGATGGACGGACTGGCCGCGGCGCGCATACTGCTGGACCCACAGGAGGAAGACAAGGACCAC
GAGACCTACGACGACGGGGCCGCCGTCAGCCGGCCGAAGGTGCTGATGCTCACCACCTTCGACGCGGACGACTACGTGTA
CGAGGCGTTGCGTGCCGGAGCCTCCGGGTTCCTGCTCAAGGACGCGCCGCCCGCGGACCTGATCGCGGCGGTGCGGGTGG
TGGCCGCGGGGGACGCGTTGCTCGCCCCGAAGGTGACGCGCCGTCTGATCGCGGACTTCGCGCAGCAGCGGCCCGCGCAG
CGCAGAAGACCCGCCGTTCAGCTGGACGGCCTGACACCGCGTGAGACGGAGGTCGTTGAGCTGGTCGCCCGCGGGTTGTC
CAACCAGGAGATAGCGAACCATCTGGTGCTGGCCGAGCAGACGGTGAAGACCCACATAGGCCGCGTACTGGCGAAGCTGG
ACCTGCGCGATCGCGCGCAGGCGGTGATCTTCGCGTACGAGTCGGGGCTGGTCACGCCCGGCGACCGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-132)

Bacterial regulatory proteins, luxR family (GerE)

(170-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.961

97.881

0.381